PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG134000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 366aa MW: 38742.9 Da PI: 5.4079 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1e-18 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++++ +G g+W++ ar g++Rt+k+c++rw++yl Pavir.3KG134000.1.p 43 RGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 90 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.6e-15 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Pavir.3KG134000.1.p 96 RGNITAAEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 139 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.982 | 38 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-30 | 40 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-17 | 43 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 44 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-12 | 45 | 90 | No hit | No description |
SMART | SM00717 | 3.2E-14 | 95 | 143 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.252 | 95 | 145 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.0E-14 | 96 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 98 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.38E-11 | 100 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDMGMATGGG LDLDELKVLA MSPGGSAASA AAAGSEDEAD LRRGPWTVEE DLLLVNYIAA 60 HGEGRWNSLA RSAGLKRTGK SCRLRWLNYL RPDVRRGNIT AAEQLLILEL HSRWGNRWSK 120 IAQHLPGRTD NEIKNYWRTR VQKHAKQLRC DVNSRHFRDV VRRVWMPRLV ERIQAESSGA 180 GAGAGAGAAA EGGGQAQAAA APAVAPASTT ASAPAAYHLG PYGGHRQSAD VVVPPNGYAD 240 ADYYSYSEPG QAAAPAAMSP DNTSSALRST LTDASHAAQQ HHYATSAATP TNEGCGVGGK 300 AAGPMMDGDG VVQEEDEDVF AGTRSELLAT AGRDDDSNSK IGLPDFELGD FEMWSLEDLC 360 LQQLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 40 | 143 | 4 | 106 | B-MYB |
1gv2_A | 2e-25 | 40 | 143 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-25 | 41 | 143 | 2 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-25 | 41 | 143 | 2 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG134000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951909 | 1e-138 | JF951909.1 Triticum aestivum clone TaMYB26 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806553.1 | 0.0 | transcription factor MYB2-like | ||||
TrEMBL | A0A2S3H7R2 | 0.0 | A0A2S3H7R2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03771.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 3e-81 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG134000.1.p |