PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG129700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 37153.9 Da PI: 4.7591 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.5e-18 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv+++ +G g+W++ a+ g++Rt+k+c++rw++yl Pavir.3KG129700.1.p 37 RGPWTVEEDLLLVNYIDAHGEGRWNSLAHSAGLKRTGKSCRLRWLNYL 84 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Pavir.3KG129700.1.p 90 RGNITAAEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 133 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.829 | 32 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-30 | 34 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-15 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-22 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.58E-11 | 39 | 84 | No hit | No description |
SMART | SM00717 | 3.2E-14 | 89 | 137 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.252 | 89 | 139 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.8E-14 | 90 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 92 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.84E-11 | 94 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDMAGGLDEL EVLAMSPGGS AASAAAAGSE DVADLRRGPW TVEEDLLLVN YIDAHGEGRW 60 NSLAHSAGLK RTGKSCRLRW LNYLRPDVRR GNITAAEQLL ILELHSRWGN RWSKIAQHLP 120 GRTDNEIKNY WRTRVQKHAK QLRCDVNSRQ FRDVVRHVWM PRLAERVQAE SAGAGAGAGQ 180 AAAAAAPEAA PATTTASAPP AYHHGPYGGH RQSADVLVPP NKAHGGYAYA DYFYYSYSEP 240 GQAAAPAAMS PDDTSSALRS TLTDASATTP TNEGCGAGGA AAGPATDGAD DVVQEEEDDV 300 FAGTWSELLA TTGRDDDSKI GLPDFEFGEF EDNLWSLEDL CLQQLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 32 | 137 | 2 | 106 | B-MYB |
1gv2_A | 1e-25 | 34 | 137 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-25 | 35 | 137 | 2 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-25 | 35 | 137 | 2 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG129700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679434 | 1e-131 | HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806553.1 | 0.0 | transcription factor MYB2-like | ||||
Swissprot | Q10MB4 | 3e-88 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A2S3H7R2 | 1e-179 | A0A2S3H7R2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00769.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 8e-81 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG129700.1.p |
Publications ? help Back to Top | |||
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