PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG124100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 1748aa MW: 188777 Da PI: 6.6034

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG124100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	861	903	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + +++G++ +++I++ + ++t +c+++++k+ Pavir.3KG124100.1.p 861 PWTQEEKEIFMEMLAKFGKD-FSKISSFLM-HKTTADCVEFYYKH 903 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.09E-14	846	906	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.477	857	908	IPR017884	SANT domain
SMART	SM00717	1.8E-9	858	906	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-7	859	905	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	860	903	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.204	1065	1116	IPR017884	SANT domain
SMART	SM00717	1.3E-4	1066	1114	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.4E-8	1069	1116	IPR009057	Homeodomain-like
CDD	cd00167	0.00297	1070	1108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1748 aa Download sequence Send to blast
MPPPPPDRRD FLYREGRRHD GGGGGDPLLP PAPTPPRWRD SPYHPPPPPP PLRDHSRPSP 60 RRAPQSGSSG RPAPLKSSDL RRPPPRWPSS APLISPNRSA ISEGYYRQGG GAYDRSCPDE 120 PPIGYTPSRS DRYWTEDDGG GYKGFGRYGG GGGGRRDGRD MRGSYRRSPF RGYGSDFSRN 180 HPEQPPPPPP RRSPLRSVAV PICYDPPGNR VDRGDRDNLP RVTPWRRRES RSEVAGAAGA 240 GPGPVSVGQT TRPAPSEKEA SAQPLAGAAP HGADEEAPRK KARLGWGQGL AKYEKQKVQV 300 PADLAEAVAD GSPADTEQKT AFPVPPPEPP AAPAPPPEPP AAPAPPPPPE PPAEPAPEPP 360 APASVPPAAP APAPAAVCVP APVSAPSPAP CISPVDAPSS AAPFCTPAPE DKSCEQTANM 420 VINPTKDVPE AGDKTFSNEF SIKLDQLADD PINSIANMLA DLLQHDDSCS GDSKGQTSAS 480 KLLLLKESIS KEIEKTELEI DLMEGELKSV STKAGTAVEG SPTGVTYAEN ISPSSGTSKV 540 PLSVEISETS HVMKEPGELI SSPKPPVVQD VDAKGSDMME IENAAVCNAK TVSSEESAVS 600 PVVAEDLACA AADLSPLKAS EGSGFQIDMH NDRVETSPCH DNADSIKTEV SDDPPVRQCS 660 HHDHKYSLIG SVTSANNNIA KVMNESLFKS LPADTLRLDL VASSHLLSQR KNDHHIKERL 720 GVFKNRLRLK EQILTLKFKA YRHLWKEDLR LLSAKKQCSK SNKRTDQSNR ASHIGSQRQR 780 SSNRSRLSMP AGNLSTFLTP EMSDVASKLF SEFQIKRCRN YLKMPALIID EREKECLRFA 840 SKNSLVDDPV LVEKERVMIN PWTQEEKEIF MEMLAKFGKD FSKISSFLMH KTTADCVEFY 900 YKHHKSDSFR EVKKLLDLRQ HQPAGNFLGA KSGKKWNPEA NAASLDMLGV ASVVAAHDLE 960 YANRVEKVSA KSLIRAYGSN VSFAAKKSSD RECINNVPLN ERESVAADVL AGICGTLSPE 1020 GMGSCITSSA DLGKINMTRM EHILAPEFDR SIDDEDLLSD HECEVDPVDW NDNEKSIFIE 1080 AMNNYGKDFA RISSCVKSKS YEQCKVFFSK ARKSLGLDLI HQGAVDVSMP TSDTNGGRSD 1140 TDEACAAEMD SAICSTQSCS KIEMDVCPTE KGMGDIVTKQ PELNISNGFD VMNGKTGDDK 1200 EKADKNCGIV DHERFVEGTH QAACGPIDIN CPERTEKLHG KDDVVDQVNM HNNSAISSST 1260 EQAKAMHSEV RSCLHSVEVL HQSSKAPLET GTDASRMEEC SNNGLDNNLM KAENSGASSC 1320 IASDTCIRDN VHFANMTGAS TISPTFASSY KHSVSADVPQ TKPKPKPLVT PLTPKDLMPV 1380 QFSSAIPDPT AICFDGIASI TMPNFEDSGN RVSSSLGPKD MSKYPAFKDP TGNQHVTLFR 1440 NGDGYTNCLT TELPIFSERP ASATVGTSQT DRFTLTKFQN GRSSTLGLPN TSDGIQWARK 1500 HEEVLQGSLR LCSHNTSSDG DEQQKRHGDV KLFGKILSHQ SSLQSPVSSC NGNKSKPPSP 1560 KVDMSSVRLS NNPRDRVVCS SKPGITHLGL EERTVRSYGH LDASTTQPEP LLMMAKCQSL 1620 AGVPFYSAKN GTVGVFSDYQ QPSIQPHQSD PKRLERFSDA QKRNGMEFIS GFQQPGKISR 1680 FGGAGILVSG VSDPVAALKA QYGPSSKVMG SDVDPWKDIG SSSIPFASLT CQQWHSAVGS 1740 LEVLSTG*

Sequence ? help Back to Top

Protein Sequence Length: 1748 aa Download sequence Send to blast

MPPPPPDRRD FLYREGRRHD GGGGGDPLLP PAPTPPRWRD SPYHPPPPPP PLRDHSRPSP  60
RRAPQSGSSG RPAPLKSSDL RRPPPRWPSS APLISPNRSA ISEGYYRQGG GAYDRSCPDE  120
PPIGYTPSRS DRYWTEDDGG GYKGFGRYGG GGGGRRDGRD MRGSYRRSPF RGYGSDFSRN  180
HPEQPPPPPP RRSPLRSVAV PICYDPPGNR VDRGDRDNLP RVTPWRRRES RSEVAGAAGA  240
GPGPVSVGQT TRPAPSEKEA SAQPLAGAAP HGADEEAPRK KARLGWGQGL AKYEKQKVQV  300
PADLAEAVAD GSPADTEQKT AFPVPPPEPP AAPAPPPEPP AAPAPPPPPE PPAEPAPEPP  360
APASVPPAAP APAPAAVCVP APVSAPSPAP CISPVDAPSS AAPFCTPAPE DKSCEQTANM  420
VINPTKDVPE AGDKTFSNEF SIKLDQLADD PINSIANMLA DLLQHDDSCS GDSKGQTSAS  480
KLLLLKESIS KEIEKTELEI DLMEGELKSV STKAGTAVEG SPTGVTYAEN ISPSSGTSKV  540
PLSVEISETS HVMKEPGELI SSPKPPVVQD VDAKGSDMME IENAAVCNAK TVSSEESAVS  600
PVVAEDLACA AADLSPLKAS EGSGFQIDMH NDRVETSPCH DNADSIKTEV SDDPPVRQCS  660
HHDHKYSLIG SVTSANNNIA KVMNESLFKS LPADTLRLDL VASSHLLSQR KNDHHIKERL  720
GVFKNRLRLK EQILTLKFKA YRHLWKEDLR LLSAKKQCSK SNKRTDQSNR ASHIGSQRQR  780
SSNRSRLSMP AGNLSTFLTP EMSDVASKLF SEFQIKRCRN YLKMPALIID EREKECLRFA  840
SKNSLVDDPV LVEKERVMIN PWTQEEKEIF MEMLAKFGKD FSKISSFLMH KTTADCVEFY  900
YKHHKSDSFR EVKKLLDLRQ HQPAGNFLGA KSGKKWNPEA NAASLDMLGV ASVVAAHDLE  960
YANRVEKVSA KSLIRAYGSN VSFAAKKSSD RECINNVPLN ERESVAADVL AGICGTLSPE  1020
GMGSCITSSA DLGKINMTRM EHILAPEFDR SIDDEDLLSD HECEVDPVDW NDNEKSIFIE  1080
AMNNYGKDFA RISSCVKSKS YEQCKVFFSK ARKSLGLDLI HQGAVDVSMP TSDTNGGRSD  1140
TDEACAAEMD SAICSTQSCS KIEMDVCPTE KGMGDIVTKQ PELNISNGFD VMNGKTGDDK  1200
EKADKNCGIV DHERFVEGTH QAACGPIDIN CPERTEKLHG KDDVVDQVNM HNNSAISSST  1260
EQAKAMHSEV RSCLHSVEVL HQSSKAPLET GTDASRMEEC SNNGLDNNLM KAENSGASSC  1320
IASDTCIRDN VHFANMTGAS TISPTFASSY KHSVSADVPQ TKPKPKPLVT PLTPKDLMPV  1380
QFSSAIPDPT AICFDGIASI TMPNFEDSGN RVSSSLGPKD MSKYPAFKDP TGNQHVTLFR  1440
NGDGYTNCLT TELPIFSERP ASATVGTSQT DRFTLTKFQN GRSSTLGLPN TSDGIQWARK  1500
HEEVLQGSLR LCSHNTSSDG DEQQKRHGDV KLFGKILSHQ SSLQSPVSSC NGNKSKPPSP  1560
KVDMSSVRLS NNPRDRVVCS SKPGITHLGL EERTVRSYGH LDASTTQPEP LLMMAKCQSL  1620
AGVPFYSAKN GTVGVFSDYQ QPSIQPHQSD PKRLERFSDA QKRNGMEFIS GFQQPGKISR  1680
FGGAGILVSG VSDPVAALKA QYGPSSKVMG SDVDPWKDIG SSSIPFASLT CQQWHSAVGS  1740
LEVLSTG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.3251	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG124100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807435.1	0.0	uncharacterized protein LOC112885940 isoform X1
Refseq	XP_025807437.1	0.0	uncharacterized protein LOC112885940 isoform X1
Refseq	XP_025807438.1	0.0	uncharacterized protein LOC112885940 isoform X1
TrEMBL	A0A3L6STJ3	0.0	A0A3L6STJ3_PANMI; Uncharacterized protein
STRING	Si020953m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-82	MYB family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG124100.1.p