PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG109100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 314aa MW: 34674.8 Da PI: 6.8038 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT E++++++a +++ + Wk+I +++g +t q++s+ qky Pavir.3KG109100.1.p 60 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 104 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.14E-16 | 54 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.234 | 55 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-6 | 58 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-18 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.1E-10 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-10 | 60 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-7 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MVSMSTTPHP LDSLATGGGK EEATRMRLPE PEAVPPPAPG NEDDEGPRRV RKPYTITKSR 60 ESWTDPEHDK FLEALQLFDR DWKKIEAYVG SKTVIQIRSH AQKYFLKVQK NGTGEHLPPP 120 RPKRKASHPY PHKASKKASQ VVLPQQASHT MEQGCGAYVE TASIATDSSG NGAFPSWEND 180 HVQHFSPKHA QGSGATNNYS SSIGSQSGTW PTSEATEQEI MLPALHAMPD FARVYNFLAS 240 IFDPETNGHL QELKEMDPID AQTVLLLMKN LSINLTSPNF EEHRRLLSSH GSNMDQDMGS 300 SPSLHLPFMI TSK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12929 | 0.0 | callus| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG109100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812176.1 | 0.0 | protein REVEILLE 6-like isoform X2 | ||||
Swissprot | Q8H0W3 | 3e-91 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A2T7E3Z8 | 0.0 | A0A2T7E3Z8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00604.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 4e-94 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG109100.1.p |
Publications ? help Back to Top | |||
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