PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG107500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 296aa    MW: 32511.8 Da    PI: 8.4456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG107500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-154794148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Pavir.3KG107500.1.p 47 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 94
                         79********************************************97 PP
2Myb_DNA-binding54.13.5e-17100143146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
  Pavir.3KG107500.1.p 100 RGRITPDEERLILELHAQYGSR-WSRIARSLP-GRTDNEIKNYWRT 143
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5644494IPR017930Myb domain
SuperFamilySSF466893.84E-2944141IPR009057Homeodomain-like
SMARTSM007173.1E-134696IPR001005SANT/Myb domain
PfamPF002491.4E-134794IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2048101IPR009057Homeodomain-like
CDDcd001671.45E-94994No hitNo description
PROSITE profilePS5129423.77295149IPR017930Myb domain
SMARTSM007172.9E-1599147IPR001005SANT/Myb domain
PfamPF002495.0E-15100143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-23102147IPR009057Homeodomain-like
CDDcd001675.42E-11104143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDHRSMAAAT MSMFSRSKQK KDGERSSSIG NNQQAAAAAA VPLGMRKGPW TEEEDAQLVW  60
FVRLFGERRW DFLAKVSGLR RTGKSCRLRW VNYLHPGLRR GRITPDEERL ILELHAQYGS  120
RWSRIARSLP GRTDNEIKNY WRTRTRKQKA ASQQAKASAS ASSSSTVTTT ASCSAGSPSS  180
GSGRLTAASS SALRESGGGD VEDDAELDEA STTAASQHRH QQQQQESSYT MDQFWNEIAA  240
ADAAASYMVD GWGGAGHPAA AEPPAPSSPV WEYCSDYSLW RIDDEEYYKK MLDAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26451485107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.36361e-138leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG107500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283601e-100KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806767.11e-104transcription factor MYB48-like
TrEMBLA0A2S3H7I21e-152A0A2S3H7I2_9POAL; Uncharacterized protein
STRINGPavir.Ca00653.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-58myb domain protein 48