PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG103600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 344aa    MW: 35115.4 Da    PI: 8.9933
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG103600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.74.4e-3788146361
               zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          e  lkcprC+stntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
  Pavir.3KG103600.2.p  88 EPGLKCPRCESTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 146
                          56789************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3671143IPR003851Zinc finger, Dof-type
PfamPF027018.7E-3291145IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.65891145IPR003851Zinc finger, Dof-type
PROSITE patternPS01361093129IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MIFPPAFLDS SSWNDNQQQQ QQQAHHHQVA ASGGGGEGNH DLLQPSIMGE ALPEGGAGGG  60
GTSGQQVGPA KPISMAERAR LARIPLPEPG LKCPRCESTN TKFCYFNNYS LSQPRHFCRA  120
CRRYWTRGGA LRNVPVGGGY RRHAKRAKPK AASAAASGTA SAATAALAPA GSTSSAACTT  180
TNVPALPGPA MLGGNLSMLP PLLRLADFDA MSLGSSFSGM GKPFLDGAGG YSVGGGSGPG  240
LEQWRVQQMQ SFPFLHAMDQ GPLGPPLAMT MAPGMFQLGL DSGDGRGGGG GAGGENGSGE  300
LHVMQAKREG GGYPARGIYG DHHLAAAGYA SYSNNAATGN HLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.38200.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG103600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0793561e-113AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence.
GenBankAK1089331e-113AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.
GenBankAP0149611e-113AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankGQ1835521e-113GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807608.11e-160dof zinc finger protein DOF3.6-like isoform X1
TrEMBLA0A3L6T2271e-159A0A3L6T227_PANMI; Dof zinc finger protein DOF3.6-like isoform X3
STRINGPavir.J20758.1.p1e-171(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.16e-43OBF-binding protein 3