PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG099800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 563aa MW: 64132.7 Da PI: 9.0395

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG099800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	346.6	4e-106	184	554	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+av+++d +la++l++++++++spdgd +qRla+y++ +L+arla+ +s+ly++l +++ + +e++++++l ++P+ Pavir.3KG099800.1.p 184 LRTLLIHCAQAVAADDRQLATELIKKIRQHSSPDGDCTQRLAFYLVDGLEARLAGIGSQLYRKLLAKRVT---DEEVFKIYNLCLSAFPL 270 6789*********************************************************9999888...7889999****** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 l+ s+ aN++I ea g+++vHiiDf+i G+QWp+L+q++a++ + pp+lR+Tg++ ++g e e+ g+rLa++A+ ++vpf++ Pavir.3KG099800.1.p 271 LRSSYAFANKTIIEASRGQTKVHIIDFGICFGFQWPSLIQQFAEQ-GVPPMLRVTGIDVTRPGfgTLEIAEQAGKRLADYANMFKVPFQY 359 ****************************************6.889******99989899999**************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +++r+e++++e+L+++++E +++n+ +++++l de+v+++s+rd+vLkl+++++Pkv+++v + +++s+ F +rf e l +ys++f Pavir.3KG099800.1.p 360 QG-ISSRFENVQIEDLNIEEDEIVIINCLYRMKSLGDETVAMNSARDRVLKLMRRINPKVFILVVVNGSYSSPFFITRFKELLFHYSSVF 448 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+++a++pr++e+r+ +E ++l+re+ n++ cegaer+er et+++W++r +aGF+++p++ + +++ + + ++ + + +e+sg+l Pavir.3KG099800.1.p 449 DMFDANVPRDNEARKLLEGRVLAREAINIIGCEGAERTERPETYKQWQARSLKAGFEQLPVDPAIFNSILEMKKAIYHEDFVADEDSGWL 538 *************************************************************************999****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r + ++S W+ Pavir.3KG099800.1.p 539 LQGWKGRVMHAISKWK 554 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.985	158	534	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-103	184	554	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MSSHSMLHPL PAPLSPYNYG RSLFMPYQPS TSTGRAARFG FPALQIIRSA EDAKGFDKLV 60 IYLDSDKLSI CRLTTKAKVV EKSKCAVFQI TDHRVNNPYI QDLNTREERS SKQHTNTITC 120 EISQNRKFDR ILLCYRHECF NETLSLRELM AKQASKDSPK GQSKGHAQQR LRGKRQINKE 180 VVDLRTLLIH CAQAVAADDR QLATELIKKI RQHSSPDGDC TQRLAFYLVD GLEARLAGIG 240 SQLYRKLLAK RVTDEEVFKI YNLCLSAFPL LRSSYAFANK TIIEASRGQT KVHIIDFGIC 300 FGFQWPSLIQ QFAEQGVPPM LRVTGIDVTR PGFGTLEIAE QAGKRLADYA NMFKVPFQYQ 360 GISSRFENVQ IEDLNIEEDE IVIINCLYRM KSLGDETVAM NSARDRVLKL MRRINPKVFI 420 LVVVNGSYSS PFFITRFKEL LFHYSSVFDM FDANVPRDNE ARKLLEGRVL AREAINIIGC 480 EGAERTERPE TYKQWQARSL KAGFEQLPVD PAIFNSILEM KKAIYHEDFV ADEDSGWLLQ 540 GWKGRVMHAI SKWKPNESCS EQ*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MSSHSMLHPL PAPLSPYNYG RSLFMPYQPS TSTGRAARFG FPALQIIRSA EDAKGFDKLV  60
IYLDSDKLSI CRLTTKAKVV EKSKCAVFQI TDHRVNNPYI QDLNTREERS SKQHTNTITC  120
EISQNRKFDR ILLCYRHECF NETLSLRELM AKQASKDSPK GQSKGHAQQR LRGKRQINKE  180
VVDLRTLLIH CAQAVAADDR QLATELIKKI RQHSSPDGDC TQRLAFYLVD GLEARLAGIG  240
SQLYRKLLAK RVTDEEVFKI YNLCLSAFPL LRSSYAFANK TIIEASRGQT KVHIIDFGIC  300
FGFQWPSLIQ QFAEQGVPPM LRVTGIDVTR PGFGTLEIAE QAGKRLADYA NMFKVPFQYQ  360
GISSRFENVQ IEDLNIEEDE IVIINCLYRM KSLGDETVAM NSARDRVLKL MRRINPKVFI  420
LVVVNGSYSS PFFITRFKEL LFHYSSVFDM FDANVPRDNE ARKLLEGRVL AREAINIIGC  480
EGAERTERPE TYKQWQARSL KAGFEQLPVD PAIFNSILEM KKAIYHEDFV ADEDSGWLLQ  540
GWKGRVMHAI SKWKPNESCS EQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-44	191	555	26	380	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG099800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809503.1	0.0	scarecrow-like protein 30
Swissprot	O80933	1e-144	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2T7E744	0.0	A0A2T7E744_9POAL; Uncharacterized protein
STRING	Pavir.Ca00617.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-147	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG099800.1.p