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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.3KG099700.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 538aa MW: 61579.1 Da PI: 6.9903 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3KG099700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 366.5 | 3.7e-112 | 158 | 529 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l+ lL++cAea++s+++ ++lL+++++++sp+gd qRla yf+ AL+ar+a+++s++y++l +++t+ +s+ l+a++lf ++P+
Pavir.3KG099700.1.p 158 LRALLIQCAEAIASNKQPFDRELLTKIRNHSSPYGDGSQRLANYFVDALEARIAGTGSQIYQKLMAKRTN---TSDMLKAYRLFIAACPF 244
5789************************************************************999998...89*************** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
++++ Nq+I++++ g+ +vHiiDf+i+ G+QWp+L+q +a+R++gpp+lRiT ++ pe+g +++eetg+rLa++Ae ++vpf++
Pavir.3KG099700.1.p 245 TNVAYYYSNQTIVDELVGQPTVHIIDFGITFGFQWPSLIQRFANREGGPPNLRITSIDVPEPGfrPCKKIEETGKRLAEYAEIFNVPFQY 334
**************************************************************99999*********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+ va+r+e++ +++L+++++E+l++n+ +++++l de+ +++s+rd+vL+++k+++P+++++ + +ns+ Fl rf e l yys+lf
Pavir.3KG099700.1.p 335 QG-VASRWENICIKDLNIDKDEVLIINCLHKMKNLSDETEDIDSARDRVLRTIKRMNPDILIIGVANGLYNSPFFLPRFREVLFYYSSLF 423
**.7************************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
d+++++++r +e+ri +Er l+g ++ nvvacegaer+ + e++++W+ r+ +aGFk++p+++++ k ++ + + + v+e+ g+l
Pavir.3KG099700.1.p 424 DMINSTVARSHEARILIERDLFGADVFNVVACEGAERIVKPESYKQWQVRILNAGFKQLPVNQTILKGLIERKKELYHEDFVVDEDGGWL 513
********************************************************************999999999888********** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
++gWk+r + ++S+W+
Pavir.3KG099700.1.p 514 LQGWKGRIMHALSSWK 529
***************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 538 aa
Download sequence Send
to blast |
MDNPEYCEIN SNMTLEYINK ILMEEDIDET ARSWGMHLTA NDRTSQTDHL SLQFTKGDEQ 60
ANKFVAIIEK LAVDLDSSEL AVSKQMTDAI VTQKGKHVNK IRSHPHMNLE LLDARNTHLR 120
EMKVKEAHDS SQNAQGKEYG QRQVKSRAKK QQVEAIDLRA LLIQCAEAIA SNKQPFDREL 180
LTKIRNHSSP YGDGSQRLAN YFVDALEARI AGTGSQIYQK LMAKRTNTSD MLKAYRLFIA 240
ACPFTNVAYY YSNQTIVDEL VGQPTVHIID FGITFGFQWP SLIQRFANRE GGPPNLRITS 300
IDVPEPGFRP CKKIEETGKR LAEYAEIFNV PFQYQGVASR WENICIKDLN IDKDEVLIIN 360
CLHKMKNLSD ETEDIDSARD RVLRTIKRMN PDILIIGVAN GLYNSPFFLP RFREVLFYYS 420
SLFDMINSTV ARSHEARILI ERDLFGADVF NVVACEGAER IVKPESYKQW QVRILNAGFK 480
QLPVNQTILK GLIERKKELY HEDFVVDEDG GWLLQGWKGR IMHALSSWKP KESYNNQ*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
