PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG091900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 287aa MW: 32299.3 Da PI: 9.5973 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 62 | 112 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Pavir.3KG091900.2.p 62 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 112 79***********************************************95 PP | |||||||
2 | K-box | 97.2 | 2.4e-32 | 130 | 227 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ss ++e + ++++qe+++L+++i nLq+++R l+G+++ ++s+k+L+qLe +L+k+l kiR++Kne+l +++e++q++e elq++n Pavir.3KG091900.2.p 130 SSAAGtVAEVTIQHYKQESDRLRQQITNLQNSNRTLVGDSIATMSHKDLKQLEARLDKGLVKIRARKNEVLSSELEYMQRREMELQNDNL 219 44444689999******************************************************************************* PP K-box 93 aLrkklee 100 +Lr+++ee Pavir.3KG091900.2.p 220 YLRSRVEE 227 ****9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.221 | 54 | 114 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-40 | 54 | 113 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.99E-45 | 55 | 128 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-33 | 55 | 127 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 56 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 56 | 110 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 63 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 76 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 91 | 112 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.267 | 141 | 231 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.2E-24 | 141 | 225 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MHIQEVQATP STDIMWGFSG QTTLTSTTGL KLKEPAVSSP GSGSVGAAAA AEKNGRGKIE 60 IKRIENTTNR QVTFCKRRNG LLKKAYELSV LCDAEVALIV FSSRGRLYEY SNNSVKATIE 120 RYKKATSDNS SAAGTVAEVT IQHYKQESDR LRQQITNLQN SNRTLVGDSI ATMSHKDLKQ 180 LEARLDKGLV KIRARKNEVL SSELEYMQRR EMELQNDNLY LRSRVEENER AQQTVNMMGA 240 PSTSEDQQGF IPYDPIRSFL QFNIMQQQPQ FYSQQEDRKD FNLGGR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
6bz1_B | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
6bz1_C | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
6bz1_D | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.42035 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in lodicules, stamens, carpels and ovules during their development. {ECO:0000269|PubMed:16326928}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the lodicule, stamen carpel and ovule primordia. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG091900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | MZEZAG1A | 0.0 | L18924.1 Corn ZAG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960599.1 | 0.0 | MADS-box transcription factor 58 | ||||
Swissprot | Q2V0P1 | 1e-126 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A3L6RE12 | 0.0 | A0A3L6RE12_PANMI; MADS-box transcription factor 58 | ||||
STRING | Pavir.Ca00579.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 5e-94 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG091900.2.p |