PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG077700.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 438aa    MW: 47912.3 Da    PI: 8.9466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG077700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-14281326454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+      +K++Ka+iLe Av +I +L
  Pavir.3KG077700.5.p 281 SHVEAERQRREKLNKRFCALRAIVPNI-----TKMDKASILEDAVTHITDL 326
                          799***********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-20183IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-18274341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-15275331No hitNo description
PROSITE profilePS5088817.072277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-12281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-18281341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MYFSFPRHVG GPGKVFAAGR PLWIPNNDLK VSPANYCYRG FLADAAGFKT IVLVPFKAGV  60
LEVGSIQNVS ESAEALQTIR SLFLGTHSTS TASEKHEDNI SVQISPGSTK IFGKNLSICQ  120
PSAIKAADPS KVDGGSRDEQ KSCSGDSMLL PNLRKGLQNF TWSQARGLNS QQQKFGNGIL  180
VVTSETAQSG DGSVPGTGVS SCQLQEPQQI LTQPPLQPRG PMQIDFRVGS SSKFGVLISQ  240
KAMLDGGDGD IDGLFKEERE DRQPRKRERK PTNGREEQPL SHVEAERQRR EKLNKRFCAL  300
RAIVPNITKM DKASILEDAV THITDLKKKL EKMEAEREKL SELGKVDANE QTTRPEPEVD  360
IQVVHGEILV RVVSPVDNHP IKKVLQAFEE AEVKIHESKV TANDGTVVHS FVIKPPSSEQ  420
NIRNKLLASI SNASRSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-21274337264Transcription factor MYC2
5gnj_B1e-21274337264Transcription factor MYC2
5gnj_E1e-21274337264Transcription factor MYC2
5gnj_F1e-21274337264Transcription factor MYC2
5gnj_G1e-21274337264Transcription factor MYC2
5gnj_I1e-21274337264Transcription factor MYC2
5gnj_M1e-21274337264Transcription factor MYC2
5gnj_N1e-21274337264Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227670.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG077700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805866.10.0transcription factor bHLH13-like
RefseqXP_025805867.10.0transcription factor bHLH13-like
RefseqXP_025805868.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SY370.0A0A3L6SY37_PANMI; Transcription factor bHLH13-like
STRINGPavir.Ca00449.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.17e-48ABA-inducible BHLH-type transcription factor