PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG077700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 47912.3 Da PI: 8.9466 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.3 | 1.5e-14 | 281 | 326 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +K++Ka+iLe Av +I +L Pavir.3KG077700.3.p 281 SHVEAERQRREKLNKRFCALRAIVPNI-----TKMDKASILEDAVTHITDL 326 799***********************7.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.0E-20 | 1 | 83 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.93E-18 | 274 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.84E-15 | 275 | 331 | No hit | No description |
PROSITE profile | PS50888 | 17.072 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-12 | 281 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 281 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-14 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MYFSFPRHVG GPGKVFAAGR PLWIPNNDLK VSPANYCYRG FLADAAGFKT IVLVPFKAGV 60 LEVGSIQNVS ESAEALQTIR SLFLGTHSTS TASEKHEDNI SVQISPGSTK IFGKNLSICQ 120 PSAIKAADPS KVDGGSRDEQ KSCSGDSMLL PNLRKGLQNF TWSQARGLNS QQQKFGNGIL 180 VVTSETAQSG DGSVPGTGVS SCQLQEPQQI LTQPPLQPRG PMQIDFRVGS SSKFGVLISQ 240 KAMLDGGDGD IDGLFKEERE DRQPRKRERK PTNGREEQPL SHVEAERQRR EKLNKRFCAL 300 RAIVPNITKM DKASILEDAV THITDLKKKL EKMEAEREKL SELGKVDANE QTTRPEPEVD 360 IQVVHGEILV RVVSPVDNHP IKKVLQAFEE AEVKIHESKV TANDGTVVHS FVIKPPSSEQ 420 NIRNKLLASI SNASRSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 1e-21 | 274 | 337 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.22767 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG077700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805866.1 | 0.0 | transcription factor bHLH13-like | ||||
Refseq | XP_025805867.1 | 0.0 | transcription factor bHLH13-like | ||||
Refseq | XP_025805868.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A3L6SY37 | 0.0 | A0A3L6SY37_PANMI; Transcription factor bHLH13-like | ||||
STRING | Pavir.Ca00449.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46510.1 | 7e-48 | ABA-inducible BHLH-type transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG077700.3.p |