PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG077700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 598aa MW: 65008.4 Da PI: 6.5794 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.7 | 2.3e-14 | 441 | 486 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +K++Ka+iLe Av +I +L Pavir.3KG077700.2.p 441 SHVEAERQRREKLNKRFCALRAIVPNI-----TKMDKASILEDAVTHITDL 486 799***********************7.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.7E-46 | 54 | 243 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 6.28E-18 | 434 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.15E-16 | 435 | 491 | No hit | No description |
PROSITE profile | PS50888 | 17.072 | 437 | 486 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-12 | 441 | 486 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-18 | 441 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-14 | 443 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 598 aa Download sequence Send to blast |
METEIKEVSI GGFWNEEDKA ICASVLGLDA FTYLTKCGGA ISEGLVAASV LADLQSKLHN 60 LVEADGQSLR WNYAIFWQLA HTKSGGVVLG WGDGSCCEPH DGEIGFATSV GAGDASSVTR 120 KRVRKQVLQR LHTAFAGADE EDYAPGIDQV TDTEIFFLAS MYFSFPRHVG GPGKVFAAGR 180 PLWIPNNDLK VSPANYCYRG FLADAAGFKT IVLVPFKAGV LEVGSIQNVS ESAEALQTIR 240 SLFLGTHSTS TASEKHEDNI SVQISPGSTK IFGKNLSICQ PSAIKAADPS KVDGGSRDEQ 300 KSCSGDSMLL PNLRKGLQNF TWSQARGLNS QQQKFGNGIL VVTSETAQSG DGSVPGTGVS 360 SCQLQEPQQI LTQPPLQPRG PMQIDFRVGS SSKFGVLISQ KAMLDGGDGD IDGLFKEERE 420 DRQPRKRERK PTNGREEQPL SHVEAERQRR EKLNKRFCAL RAIVPNITKM DKASILEDAV 480 THITDLKKKL EKMEAEREKL SELGKVDANE QTTRPEPEVD IQVVHGEILV RVVSPVDNHP 540 IKKVLQAFEE AEVKIHESKV TANDGTVVHS FVIKPPSSEQ NIRNKLLASI SNASRSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-23 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-23 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-23 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-23 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.22767 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG077700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805866.1 | 0.0 | transcription factor bHLH13-like | ||||
Refseq | XP_025805867.1 | 0.0 | transcription factor bHLH13-like | ||||
Refseq | XP_025805868.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A2S3H6X8 | 0.0 | A0A2S3H6X8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00449.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-68 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG077700.2.p |