PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG070200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 385aa    MW: 40873.8 Da    PI: 7.878
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG070200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.13e-21288350163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++ +++L++eN +L++e+++++ke+++l s++
  Pavir.3KG070200.1.p 288 ERELKRQRRKQSNRESARRSRLRKQAECEELAQHADVLKQENASLRDEVNRIRKEYEELLSKN 350
                          89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.1E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.1E-37137261No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-17282347No hitNo description
SMARTSM003383.5E-20288352IPR004827Basic-leucine zipper domain
PfamPF001703.6E-20288350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.024290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11291347No hitNo description
CDDcd147025.27E-23293343No hitNo description
PROSITE patternPS000360295310IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGSSGADTPS KTSKASAPQE QQPPATSGAA TPAVYPDWSS FQAYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTTYAMT SPNGYADATG  120
TTAAAGDTDR KPSEGKDKSP TKRSKGSLGS LNMLTGKNPT EHGKTSGASA NGATSQSGES  180
GSESSSEGSE GNSQNDSHHK ESGQEQDGDV RSSQNGASRS PSEGKLNQTM AIMPMPSSGP  240
VPGPTTNLNI GMDYWANTAS SAPAIHGKVT PTTVTGAVVP AEQWIQDERE LKRQRRKQSN  300
RESARRSRLR KQAECEELAQ HADVLKQENA SLRDEVNRIR KEYEELLSKN NSLKEKLEGK  360
QHKTDEAGLN KLQHSGDDSQ KKGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310RRSRLRK
2304311RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.128470.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG070200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0347690.0BT034769.2 Zea mays full-length cDNA clone ZM_BFb0017D08 mRNA, complete cds.
GenBankBT0606890.0BT060689.1 Zea mays full-length cDNA clone ZM_BFb0034I13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131383.10.0uncharacterized protein LOC100192709
RefseqXP_008672076.10.0putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_008672077.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLB4FCD10.0B4FCD1_MAIZE; BZIP transcription factor 16
STRINGPavir.Ca00403.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-73basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]