PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG063600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 311aa MW: 33033.2 Da PI: 9.3733 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.7 | 4.9e-32 | 77 | 130 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+ Pavir.3KG063600.2.p 77 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 130 69**************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.8E-29 | 78 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.2E-30 | 79 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-22 | 79 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.682 | 80 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-29 | 192 | 264 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.21E-18 | 196 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.0E-27 | 203 | 259 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MYLSGAQGEL PVPMAMHGGG GGSPYLGLHH GHHHEHPQQH SHGPNGRHMS PPEPEEAKKR 60 QLAVVPVGAV GGGVAGGVRY RECLKNHAAA IGGSATDGCG EFMPAGEEGS LDALRCSACG 120 CHRNFHRKEP PGGDARQLHG HGHGHHHPLS PLAAAHHHRG LLVAALPPAP TRMVMPLSAA 180 MQAHHSAASA ESDDARAQQP PARKRFRSKF TAEQKARMLG FAEEAGWRLQ KLDDAAVQRF 240 CQEVGVKRRV LKVWMHNNKH TLARRGQEGG DDPPEHLGQL AGGMPLPEPG GPGRSPSPSR 300 SPPPQQLRLD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 204 | 261 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG063600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043258 | 1e-141 | BT043258.1 Zea mays full-length cDNA clone ZM_BFc0135C02 mRNA, complete cds. | |||
GenBank | BT065005 | 1e-141 | BT065005.1 Zea mays full-length cDNA clone ZM_BFc0120L10 mRNA, complete cds. | |||
GenBank | BT065569 | 1e-141 | BT065569.1 Zea mays full-length cDNA clone ZM_BFb0298N18 mRNA, complete cds. | |||
GenBank | EU965508 | 1e-141 | EU965508.1 Zea mays clone 286516 mRNA sequence. | |||
GenBank | JX428500 | 1e-141 | JX428500.1 Zea mays subsp. mays clone pUT3098 ZHD21 ZF-HD type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443023.1 | 1e-148 | zinc-finger homeodomain protein 3 | ||||
Refseq | XP_021321592.1 | 1e-148 | zinc-finger homeodomain protein 3 | ||||
Swissprot | Q2QW44 | 1e-78 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A3L6R8Y8 | 1e-159 | A0A3L6R8Y8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ca00340.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-54 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG063600.2.p |