PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG063600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 330aa MW: 34842.3 Da PI: 8.9213 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.4e-32 | 96 | 149 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+ Pavir.3KG063600.1.p 96 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 149 69**************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.2E-29 | 97 | 149 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.8E-30 | 98 | 148 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-22 | 98 | 148 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.682 | 99 | 148 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-29 | 211 | 283 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-18 | 215 | 283 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.8E-27 | 222 | 278 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MAMICSGAGV AAEEGSKQSM YLSGAQGELP VPMAMHGGGG GSPYLGLHHG HHHEHPQQHS 60 HGPNGRHMSP PEPEEAKKRQ LAVVPVGAVG GGVAGGVRYR ECLKNHAAAI GGSATDGCGE 120 FMPAGEEGSL DALRCSACGC HRNFHRKEPP GGDARQLHGH GHGHHHPLSP LAAAHHHRGL 180 LVAALPPAPT RMVMPLSAAM QAHHSAASAE SDDARAQQPP ARKRFRSKFT AEQKARMLGF 240 AEEAGWRLQK LDDAAVQRFC QEVGVKRRVL KVWMHNNKHT LARRGQEGGD DPPEHLGQLA 300 GGMPLPEPGG PGRSPSPSRS PPPQQLRLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-24 | 223 | 280 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG063600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043258 | 1e-141 | BT043258.1 Zea mays full-length cDNA clone ZM_BFc0135C02 mRNA, complete cds. | |||
GenBank | BT065005 | 1e-141 | BT065005.1 Zea mays full-length cDNA clone ZM_BFc0120L10 mRNA, complete cds. | |||
GenBank | BT065569 | 1e-141 | BT065569.1 Zea mays full-length cDNA clone ZM_BFb0298N18 mRNA, complete cds. | |||
GenBank | EU965508 | 1e-141 | EU965508.1 Zea mays clone 286516 mRNA sequence. | |||
GenBank | JX428500 | 1e-141 | JX428500.1 Zea mays subsp. mays clone pUT3098 ZHD21 ZF-HD type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443023.1 | 1e-148 | zinc-finger homeodomain protein 3 | ||||
Refseq | XP_021321592.1 | 1e-148 | zinc-finger homeodomain protein 3 | ||||
Swissprot | Q2QW44 | 2e-78 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A3L6R8Y8 | 1e-159 | A0A3L6R8Y8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ca00340.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-54 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG063600.1.p |