PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG062200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 211aa MW: 23823.7 Da PI: 5.0411 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 23.8 | 9.4e-08 | 28 | 76 | 4 | 49 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllsk 49 fw+k+ e+ +df++ e+P++r+kk++ a + m+s ++P +l+k Pavir.3KG062200.1.p 28 DFWKKKqeeAEEIKDFHEYEFPMSRLKKVVCAKKGKMMMSFDTPSFLTK 76 5999874556777889999**************************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKETDHPIDI HPSSKGSLPE SEQRLKEDFW KKKQEEAEEI KDFHEYEFPM SRLKKVVCAK 60 KGKMMMSFDT PSFLTKRANN SGPNAIGIIE SNHIKPKVAQ IRSNIDAHIK TNAISGINIE 120 ATINTNDVQH QHGSLEVVSA TKLSDDNKNI NWDEVDMADD SLLIEFWEDV MMKEDITPQE 180 VPSHVPEIEG SDHGPYLIDD IISSASRRRS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG062200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2T7E611 | 1e-73 | A0A2T7E611_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00330.1.p | 2e-89 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9174 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 9e-06 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG062200.1.p |