PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG062100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 462aa    MW: 52176.3 Da    PI: 5.7701
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG062100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC75.86e-2425121497
                NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                           fw k+   ie  +df +h++P++r++k++ a++   m++ ++P +l+kace+f+ el++ +w++a++ +r+ +  sdia+a+ + + +d
  Pavir.3KG062100.2.p  25 EFWRKKqheIEAIEDFGEHTIPMTRLRKVICAEKGKMMMTFDTPSFLTKACEIFVQELSFHAWMRAKSHHRSIILDSDIAEAICSINFYD 114
                          7998776789******************************************************************************** PP

                NF-YC  91 flvdivp 97 
                          fl di  
  Pavir.3KG062100.2.p 115 FLNDILH 121
                          ****875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001252.0E-727108IPR007125Histone H2A/H2B/H3
SuperFamilySSF471133.05E-1445120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.8E-1646120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNCLLKICTS TRTPMSLSEQ QMVDEFWRKK QHEIEAIEDF GEHTIPMTRL RKVICAEKGK  60
MMMTFDTPSF LTKACEIFVQ ELSFHAWMRA KSHHRSIILD SDIAEAICSI NFYDFLNDIL  120
HTYHEEHYSA SHPKSTKKSF DIRFTNQLST SSQPHFDQYP TKQYHQHPTN NSPHLPPINV  180
YQMPLPLAFA PQEYLLMPTT TITPTSIMSE TIPPMTCTTR GLDFFGNNIV ATSSAITSLQ  240
LPPEALPNIQ NNNMSTVTST DTCCVGNSNT RNVNAQDGGV TLHYPYAPQI SFQLSSPSPL  300
SNSGAHISID ISELKHRRHD FTHIKNASHV YQVNSTSNAI DQKSNIGSDD GQQQDRGEES  360
DVSNHQNIMH ETLDAKLIST TNVSKDDRKN INWDEIDMAD DSLLARFWEE VMMDEDLAHL  420
PTATSTSDHV PLPFDRLHEF GQEPYLLNDI ITFASTSGRH S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-1433120693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG062100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445118.11e-123uncharacterized protein LOC8069654
TrEMBLA0A3L6T1690.0A0A3L6T169_PANMI; Uncharacterized protein
STRINGPavir.Ca00329.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-20nuclear factor Y, subunit C4