PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG062100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 564aa    MW: 64250.9 Da    PI: 6.8784
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG062100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC75.48.3e-24127223497
                NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                           fw k+   ie  +df +h++P++r++k++ a++   m++ ++P +l+kace+f+ el++ +w++a++ +r+ +  sdia+a+ + + +d
  Pavir.3KG062100.1.p 127 EFWRKKqheIEAIEDFGEHTIPMTRLRKVICAEKGKMMMTFDTPSFLTKACEIFVQELSFHAWMRAKSHHRSIILDSDIAEAICSINFYD 216
                          7998776789******************************************************************************** PP

                NF-YC  91 flvdivp 97 
                          fl di  
  Pavir.3KG062100.1.p 217 FLNDILH 223
                          ****875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001252.8E-7129210IPR007125Histone H2A/H2B/H3
SuperFamilySSF471134.0E-14147222IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.9E-16148222IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MCVILVIKKN WSFLLQLIFQ FVFHKKPKFY RWRSSSYLMK NHGTIQPKSS TYLLTTLINR  60
LLYKPCMSQV RTMYLLHMDS SCCASQLYLC ITGATIRSKK KEMNCLLKIC TSTRTPMSLS  120
EQQMVDEFWR KKQHEIEAIE DFGEHTIPMT RLRKVICAEK GKMMMTFDTP SFLTKACEIF  180
VQELSFHAWM RAKSHHRSII LDSDIAEAIC SINFYDFLND ILHTYHEEHY SASHPKSTKK  240
SFDIRFTNQL STSSQPHFDQ YPTKQYHQHP TNNSPHLPPI NVYQMPLPLA FAPQEYLLMP  300
TTTITPTSIM SETIPPMTCT TRGLDFFGNN IVATSSAITS LQLPPEALPN IQNNNMSTVT  360
STDTCCVGNS NTRNVNAQDG GVTLHYPYAP QISFQLSSPS PLSNSGAHIS IDISELKHRR  420
HDFTHIKNAS HVYQVNSTSN AIDQKSNIGS DDGQQQDRGE ESDVSNHQNI MHETLDAKLI  480
STTNVSKDDR KNINWDEIDM ADDSLLARFW EEVMMDEDLA HLPTATSTSD HVPLPFDRLH  540
EFGQEPYLLN DIITFASTSG RHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-14135222693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG062100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445118.11e-122uncharacterized protein LOC8069654
TrEMBLA0A3L6T1690.0A0A3L6T169_PANMI; Uncharacterized protein
STRINGPavir.Ca00329.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-20nuclear factor Y, subunit C4