PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG057200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 230aa MW: 24777.8 Da PI: 10.1371 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 43 | 87 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ + Pavir.3KG057200.1.p 43 RRPFTVAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 87 679*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.926 | 1 | 37 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-8 | 25 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.31E-21 | 26 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.565 | 38 | 92 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-15 | 42 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 43 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-12 | 45 | 88 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-17 | 51 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMPINRWNRT TIDASCAPGQ LIDLAGKSCR LRWFNQLDPR INRRPFTVAE EERLLQAHRA 60 HGNRWALISR LFPGRTDNAV KNHWHVVMAR RRRSHQRSAG GGTHLAAAPG TGCSPPPRLP 120 PFQCFHFGAP PPASAKTTTT GNLCFARPGS GPSSLVSSSS GTFSVRNCHV ANNFAFSSPR 180 EAAAAAPEDD HRHGMVKDEH AGNDDDEDGG GAAATKKDVP FIDFLGVGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-18 | 11 | 91 | 31 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 97 | RRSHQRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG057200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972498 | 3e-82 | EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809406.1 | 3e-98 | transcription factor CSA-like | ||||
TrEMBL | A0A3L6RBZ8 | 1e-105 | A0A3L6RBZ8_PANMI; Transcription factor MYB44-like | ||||
STRING | Pavir.Cb01957.1.p | 3e-99 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 1e-38 | myb domain protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG057200.1.p |