PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG051400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 196aa    MW: 21318.2 Da    PI: 9.9166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG051400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv +++ +G g+W++ +   g+ R++k+c++rw +yl
  Pavir.3KG051400.1.p 14 KGAWTKEEDQRLVAYINAHGEGCWRSLPMAAGLQRCGKSCRLRWINYL 61
                         79********************************************97 PP
2Myb_DNA-binding59.85.7e-1967111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T+eEd+l++++++ lG++ W++Ia +++ gRt++++k++w+++
  Pavir.3KG051400.1.p  67 RGNFTEEEDDLIIKLHQILGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.377961IPR017930Myb domain
SuperFamilySSF466891.22E-3013108IPR009057Homeodomain-like
SMARTSM007172.4E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
CDDcd001677.75E-111661No hitNo description
PROSITE profilePS5129428.02462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2865116IPR009057Homeodomain-like
SMARTSM007176.8E-1866114IPR001005SANT/Myb domain
PfamPF002493.1E-1767111IPR001005SANT/Myb domain
CDDcd001674.86E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIN AHGEGCWRSL PMAAGLQRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDDLIIK LHQILGNKWS LIAGRLPGRT DNEIKNYWNT HIKRRLLARG  120
IDPQTHHPLP LSGAAANAPS SRRPQDQPAA ARSSCSPQTS GAGHSAPVLH LGGIDLNLSL  180
SPPSQPSSPV AAVAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30141167108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.230941e-140root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG051400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569051e-143AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBankEU9639111e-143EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds.
GenBankHQ8586921e-143HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977234.11e-113myb-related protein Zm38
SwissprotP813931e-86MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2T7E5P51e-113A0A2T7E5P5_9POAL; Uncharacterized protein
STRINGPavir.Ca00232.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-88myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]