PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG048600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 457aa    MW: 48478.9 Da    PI: 9.7584
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG048600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57389.54.1e-28202299297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          +++rlws  De+v+L+Gl  ++a++g+   +++di ++  ++++++s++vs +q+++K+rrLK+K++   ++ak+g++p+f ++hd+++f
  Pavir.3KG048600.1.p 202 RPSRLWSLADELVILRGLAAYRARRGVlpGSMHDIAKLQGQIQSELSVQVSPTQVSDKVRRLKQKYNLFASRAKNGRDPDFPTSHDRSVF 291
                          679************************877888********************************************************* PP

               DUF573  90 elskkiWg 97 
                          el k++Wg
  Pavir.3KG048600.1.p 292 ELGKRVWG 299
                          *******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-25204299IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAPKRPASPA APPSGSASEA SDAEADAPLH HPSSPSPSKT PPPPNPNPKS PAAAPALVAE  60
DSAAAGSDSG AAYDSDAGHR PALRKAGAVA SPSPSRKPRS PRPRSPSRSR SRSRSPDAAS  120
ESDGAASDAE PAAGDGADSA DDGNASPLPP PRGSRGEAAA IKPLSSRPMD PPRRPTVPSF  180
TEPRPKRPRS VAVPSSEEQL KRPSRLWSLA DELVILRGLA AYRARRGVLP GSMHDIAKLQ  240
GQIQSELSVQ VSPTQVSDKV RRLKQKYNLF ASRAKNGRDP DFPTSHDRSV FELGKRVWGP  300
TTSAAGGNAA GDGYEIVGVG GGGGESEEER EIGECDEDVE SEGDERARKN RRLKPIAMAN  360
GNATGFGAVN NNSRGGFDFE KGKDAYPYLW ETVEDLSKEH PNGVAFKKAF ELIEGPKARG  420
MEEKLRKFRL TEIRHQLRRM ELMKETVKMV LDALEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348354KNRRLKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158580.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG048600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804708.10.0STOREKEEPER protein-like
TrEMBLA0A3L6TCP40.0A0A3L6TCP4_PANMI; Uncharacterized protein
STRINGPavir.J33828.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-12DNA-binding storekeeper protein-related transcriptional regulator