PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG048500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 206aa MW: 24103.4 Da PI: 9.6908

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG048500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.2	7.1e-15	63	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn Y+ e+GF +r k++ s ++++ ++f+Cs+ g+++++ k+ ++++t+Cka+l++ +++++ w v + Pavir.3KG048500.1.p 63 EYYNLYSWECGFGIRWGKKRWSekkckndqnRTKRYQLGQEFYCSCRGNADPNVKT--------SSSKTNCKAMLRLYRTSNDGWIVGEH 144 69***********988877666675444333333455789***9999888........899******************* PP FAR1 82 eleHnHela 90 +eHnH+l+ Pavir.3KG048500.1.p 145 ISEHNHPLS 153 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-12	63	153	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MRSKQVPWKK RNTKFEGAEY RDPVPGKQSA LQQALMKFAD RRNGYVINPT VGTEFDNCDE 60 GYEYYNLYSW ECGFGIRWGK KRWSEKKCKN DQNRTKRYQL GQEFYCSCRG NADPNVKTSS 120 SKTNCKAMLR LYRTSNDGWI VGEHISEHNH PLSETCGEKK HWPSHHHLDK YTKDLIRMLR 180 ENNIGITKLY TILGNFLGRC KMCLQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG048500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6PZI2	1e-68	A0A3L6PZI2_PANMI; Uncharacterized protein
STRING	Pavir.J37340.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	6e-13	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Pavir.3KG048500.1.p