PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG036400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 890aa    MW: 96613.1 Da    PI: 7.0849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG036400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696957321355
                          HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Pavir.3KG036400.1.p 695 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 732
                          67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-286154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804682731IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4695740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGFC GHASCSAGSE APDAGCEPGS  60
SVCTLVRKIM ASQIHVVGEG TIGRAAFTGN HQWIIHDPAN DHSLRSEVSA EINHQFVAGI  120
RTIAIIPVLP RGVLQLGSTN VVVEDTNLVL QYKKLCSQLN NRSSMASSSS VKNELNQKVQ  180
SRPLNAPPSM YSADVRSKLF GGSPVTYQQC YGLDATTVSS SMLANTGSNA SLLMVAQRNG  240
QAVKEHIIYA PDTRFRPQNP YCDRRVESDT QSSAVSSDFI SSISTSMGKH PLLMTNSRQL  300
EQGNMGEQSD PRNFLLKSLA YRSPLVHENT NMILLHGRSQ LSDFVNSHGG FGFLPEGCRV  360
VKGNLYASTA NQNLEQRCNS TSGIAGHKAA ISYKMPQSAQ VVMKMECPKG ETFQASAAVS  420
SGSNLSSSLK TAISQEKHIS SSDLGGPKKA NEVHDPADAI VQAVKNMDRR KLPDISNEKV  480
PSLLMDPIAE SDLFDMFGSE FHHLCRNVDN DLTRKAAKPE SSNRGAPESS VHVDTSPAFD  540
SVDGEFPYSG IFSLTDTDQL LDAVISNVNP GGKQISGDSA SCKTSVTDIP SSSYCRSKDP  600
KHCESSGAPS SLIKNEFTVS NLVKQPSFLE KEEDGCLSQN NGIHKSQIRL WIESGQNMKC  660
ESASASSSKG VDTSSKASRK RSRPGENPKP RPKDRQLIQD RIKELRELVP NGAKCSIDAL  720
LEKTIKHMLF LQSVTKHADN LKDSNESKIL GGENGPLKDY FEGGATWAFD VGSQSMTCPI  780
IVEDLERPRQ MLVEMLCEDR GIFLEIADFI KGLGLTILRG VMEARKNKIW ARFTVEANRD  840
VTRMEIFLSL MRLLEPSCDG GGAGENPNNV KMPLGVVQYP VIPATGHLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.344210.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG036400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A2T7E5C60.0A0A2T7E5C6_9POAL; Uncharacterized protein
STRINGPavir.Ca00201.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-51conserved peptide upstream open reading frame 7