PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG030600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 480aa MW: 52139.4 Da PI: 7.0277

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG030600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.4e-10	177	204	7	34
HHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeek 34 rr+++NReAAr+sR+RKka+i++Le Pavir.3KG030600.1.p 177 IRRLAQNREAARKSRLRKKAYIQQLESS 204 59***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-5	170	253	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-7	177	208	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-7	178	203	No hit	No description
SuperFamily	SSF57959	1.31E-6	178	218	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-29	255	328	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MGETSSSTSH SRQDPSLLGY GFQGAIANSP PANFFDQGGG TYFGELEEAL MHQVASLRRT 60 QQAATTSTAH HGDTKPFPTA AATAATATAR PPPTLDIFPA WPMRSAHTPK GSNLTADSTD 120 DSESSSRNNS NHSDQHGVAA NMASQFDQVS QQQIQHKNMS TSSTPKTGKT LDPKQIIRRL 180 AQNREAARKS RLRKKAYIQQ LESSKLKLAQ MEQDMQRARS QGLFLGGAPG ANTSSGAGMF 240 DVEYARWLDE NGRRMAELHG ALHAHLPDGD LRAIVDDTLT HHDELFQLKA VAAKSDVFHL 300 ITGVWTTPAE RCFLWMGGFR PSDLLKTLLP QLDPLTEQQL VGICNLQQSS QQAEEALSQG 360 LEQLHQSLAD TMAGGSLIGD ANMSFMGQMA AALGKLANLE GFVIQADNLR QQTLHQMHRI 420 LTVRQAARCF LAIGEYHNRL RALSSLWASR PREILVADEG NCGEISIAAQ PSQSQFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MGETSSSTSH SRQDPSLLGY GFQGAIANSP PANFFDQGGG TYFGELEEAL MHQVASLRRT  60
QQAATTSTAH HGDTKPFPTA AATAATATAR PPPTLDIFPA WPMRSAHTPK GSNLTADSTD  120
DSESSSRNNS NHSDQHGVAA NMASQFDQVS QQQIQHKNMS TSSTPKTGKT LDPKQIIRRL  180
AQNREAARKS RLRKKAYIQQ LESSKLKLAQ MEQDMQRARS QGLFLGGAPG ANTSSGAGMF  240
DVEYARWLDE NGRRMAELHG ALHAHLPDGD LRAIVDDTLT HHDELFQLKA VAAKSDVFHL  300
ITGVWTTPAE RCFLWMGGFR PSDLLKTLLP QLDPLTEQQL VGICNLQQSS QQAEEALSQG  360
LEQLHQSLAD TMAGGSLIGD ANMSFMGQMA AALGKLANLE GFVIQADNLR QQTLHQMHRI  420
LTVRQAARCF LAIGEYHNRL RALSSLWASR PREILVADEG NCGEISIAAQ PSQSQFSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	1e-167	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG030600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809310.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2T7E566	0.0	A0A2T7E566_9POAL; Uncharacterized protein
STRING	Sb05g003240.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-131	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG030600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]