PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG028600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 379aa MW: 41676.9 Da PI: 7.0356

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG028600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5e-11	74	103	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le Pavir.3KG028600.1.p 74 KTIRRLAQNREAARKSRLRKKAYIQQLESS 103 6789***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.0E-8	65	115	No hit	No description
SMART	SM00338	8.3E-7	70	133	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	72	116	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-8	74	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.94E-7	74	109	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.8E-29	154	227	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MRSAHTPKEG SNLTADSTDD SESSSRNNSN HSSDQLGAAT NMASQFDQVP QQQIQHKNMA 60 TSSTPKTEKT LDPKTIRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDMQRARSQ 120 GLFLGGAPGA NTSSGAGMFD MEYARWLDEH GRRMAELHGA LHAHLPDGDL RAIVDNTLTH 180 HDELFQLKAV AAKSDAFHLI TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LEPLTEQQMV 240 GICNLQQSSQ QAEEALSQGL EQLHQSLADT MAGGSLIDDA NMSFMGQMAA ALGKLANLEV 300 FVIQADNLRQ QTLHQMHRIL TVRQAARCFL AIGEYHNCLR ALSSLRASRP REILVADEGN 360 CGEISIAAQP SQSQFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MRSAHTPKEG SNLTADSTDD SESSSRNNSN HSSDQLGAAT NMASQFDQVP QQQIQHKNMA  60
TSSTPKTEKT LDPKTIRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDMQRARSQ  120
GLFLGGAPGA NTSSGAGMFD MEYARWLDEH GRRMAELHGA LHAHLPDGDL RAIVDNTLTH  180
HDELFQLKAV AAKSDAFHLI TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LEPLTEQQMV  240
GICNLQQSSQ QAEEALSQGL EQLHQSLADT MAGGSLIDDA NMSFMGQMAA ALGKLANLEV  300
FVIQADNLRQ QTLHQMHRIL TVRQAARCFL AIGEYHNCLR ALSSLRASRP REILVADEGN  360
CGEISIAAQP SQSQFSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	1e-80	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG028600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809311.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2T7E565	0.0	A0A2T7E565_9POAL; Uncharacterized protein
STRING	Pavir.J34096.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-121	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG028600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]