PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG018900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 36809.2 Da PI: 4.404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.8 | 4.5e-19 | 9 | 136 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratk.s 80 +pp++rF Pt el+ +yL++ v++ e e v+ +d+y+++P +L + ++ +++ +wyf + ++ k + g+r +ra++ Pavir.3KG018900.1.p 9 VPPCYRFTPTARELIRDYLNPWVANPGqkppfGEPEGVVCAADVYSADPGTLTSrlrRFGHDDGNWYFLCVARWKDGNaGTRMSRAVRgG 98 599*******************99877566642223579999**********853445666777******9999988769*****66648 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 g+W+ +gk +v + g ++t+ + + g k+ W+m+e+ Pavir.3KG018900.1.p 99 GTWHGSGKRVAVPR-----HGYRQTFEYR---DAAGDKSAWLMEEF 136 99**9999888777.....79*****995...78899********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-23 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.305 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-14 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEQARWPDVP PCYRFTPTAR ELIRDYLNPW VANPGQKPPF GEPEGVVCAA DVYSADPGTL 60 TSRLRRFGHD DGNWYFLCVA RWKDGNAGTR MSRAVRGGGT WHGSGKRVAV PRHGYRQTFE 120 YRDAAGDKSA WLMEEFGSSM PEATDGEGVR VICRVHRTPR AAAGGDDGGE EHQEETDEIL 180 LSSKRQRATL SQEQHDFAAA DYWTTAALAP PDAGCSYAIA STSQTAAPVM NGAASTTTWQ 240 LQPVMEQGVD YYHPTAGING DEDIKGEPEP EPEPLETTVP ADIGWQQFAE MGYGFGYAAE 300 DARMNEWMRN TFSSCPQPSD SAAQEGDDPR DETGAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG018900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826981.1 | 0.0 | NAC domain-containing protein 30-like | ||||
TrEMBL | A0A3L6Q4N4 | 0.0 | A0A3L6Q4N4_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J36623.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11474 | 18 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 4e-12 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG018900.1.p |