PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG017500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 337aa MW: 38144 Da PI: 8.3411

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG017500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	239.2	1.8e-73	3	314	110	374
GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL... 194 + v iiD++ s ++ QW+ Ll+ + R++gpp++R+T+v++ +++ l +++ L++ A++l++pf+f+ v rle+l++++L Pavir.3KG017500.1.p 3 KVVRIIDLSCStaHPWQWLKLLHDFHGRQGGPPEVRLTVVHD----DNDYLANMRILLSNEADKLKIPFQFSS-VIGRLETLDFSNLrnt 87 6789**87633799**********************....9**********************.7999999999888544 PP GRAS 195 .rvkpgEalaVnlvlqlhrll...........................................desvsleserdevLklvkslsPkvvv 240 ++k gEa+a++++lq+hrll + + ++++ ++L++++ l+P+++ Pavir.3KG017500.1.p 88 lDIKYGEAIAISCSLQMHRLLvvddkvscsgigqlqkmaniaqlkqmassvyspastlnypqtpSPQCKMPKLLATFLNAIRVLKPNIML 177 47777****************************************************99988888999999*********** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 v+eq+a+hn+ F +rf+eal+yy+alfds++a ++++ +er+ vEr++lg+ei+n++ ceg +r erhe+l++W + ++++GF v Pavir.3KG017500.1.p 178 VMEQDANHNALLFCDRFAEALNYYAALFDSFHAVVAANPrraDERAQVERMILGEEIKNILVCEGVHRHERHERLSQWAMHMDRSGFDHV 267 ***************************87764443344******************************************** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 pls +a + + l ++ +g + + es++l+l+W +r L+s+SaWr Pavir.3KG017500.1.p 268 PLSFRAIWEGNQKLMGFGLNGCQSKVESDCLLLCWGSRHLYSISAWR 314 ********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.147	1	294	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-71	3	314	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNKVVRIIDL SCSTAHPWQW LKLLHDFHGR QGGPPEVRLT VVHDDNDYLA NMRILLSNEA 60 DKLKIPFQFS SVIGRLETLD FSNLRNTLDI KYGEAIAISC SLQMHRLLVV DDKVSCSGIG 120 QLQKMANIAQ LKQMASSVYS PASTLNYPQT PSPQCKMPKL LATFLNAIRV LKPNIMLVME 180 QDANHNALLF CDRFAEALNY YAALFDSFHA VVAANPRRAD ERAQVERMIL GEEIKNILVC 240 EGVHRHERHE RLSQWAMHMD RSGFDHVPLS FRAIWEGNQK LMGFGLNGCQ SKVESDCLLL 300 CWGSRHLYSI SAWRPHKGSA SGSREHMLVQ PQRQII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-16	19	314	123	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG017500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826866.1	0.0	scarecrow-like protein 3
TrEMBL	A0A3L6Q0N9	0.0	A0A3L6Q0N9_PANMI; Uncharacterized protein
STRING	Pavir.Hb01985.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	5e-73	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Pavir.3KG017500.1.p