PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG013700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 294aa    MW: 32163 Da    PI: 3.8341
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG013700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-182880156
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Pavir.3KG013700.3.p 28 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 80
                         89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-182889IPR016177DNA-binding domain
CDDcd000187.74E-282889No hitNo description
PfamPF008479.2E-142879IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-192987IPR001471AP2/ERF domain
SMARTSM003803.2E-262993IPR001471AP2/ERF domain
PROSITE profilePS5103219.0322987IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSEMEGVSRE EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTF  60
DTQEEAAKAY DLAAIEYRGA NAVTNFDISC YLDHPLLLAQ LQQEPQVVPA LNQEPQPDQS  120
ETTVQESDSS EVKTPDDNAE PDDNAEPDAN AQADGSAEPL ALNDSIDESL WSPCMDYELD  180
IMSISNFGSA EPLAVDDSIN ESLWSPCMDY ELDIMSISNF GSSINLSEWF FDADFGSDIG  240
CLFDGCSAVD EGSKDGVGLA DFSLFEEGDG KQKDVISDME EGIHPSTMIS VGN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.300791e-135callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG013700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381841e-156BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269101e-156KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826706.11e-174AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2S3IC861e-172A0A2S3IC86_9POAL; Uncharacterized protein
STRINGSi026433m1e-166(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.27e-36ERF family protein