PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG000900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 91aa MW: 9733.92 Da PI: 8.1415 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.2 | 3e-31 | 25 | 80 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +v+Y+eC++NhAa++Gg+avDGC+Efm+s g+egtaaal CaAC CHR+FHRreve Pavir.3KG000900.1.p 25 HVHYRECQRNHAAAIGGYAVDGCREFMAS-GAEGTAAALMCAACVCHRSFHRREVEA 80 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-20 | 26 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.3E-29 | 26 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-25 | 27 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.591 | 28 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MGPQQDRRRS MANGTAARKE TKVVHVHYRE CQRNHAAAIG GYAVDGCREF MASGAEGTAA 60 ALMCAACVCH RSFHRREVEA DMDCSSTTSG * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG000900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976010 | 6e-54 | EU976010.1 Zea mays clone 508548 zinc finger homeodomain protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808589.1 | 1e-51 | mini zinc finger protein 1-like | ||||
Refseq | XP_025827869.1 | 1e-51 | mini zinc finger protein 1-like | ||||
Swissprot | B8BIU8 | 4e-30 | MIF1_ORYSI; Mini zinc finger protein 1 | ||||
Swissprot | Q2RB28 | 4e-30 | MIF1_ORYSJ; Mini zinc finger protein 1 | ||||
TrEMBL | A0A270R7F7 | 3e-50 | A0A270R7F7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CJK8 | 3e-50 | A0A2T7CJK8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RA87 | 4e-50 | A0A3L6RA87_PANMI; Mini zinc finger protein 1-like | ||||
STRING | Pavir.J13295.1.p | 2e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 5e-29 | mini zinc finger 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG000900.1.p |
Publications ? help Back to Top | |||
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