PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG000100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 260aa MW: 27642.9 Da PI: 9.0156 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.7e-39 | 32 | 91 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+al+cprCdstntkfCyynnys++qPryfCkaCrryWt+GG+lrnvPvGgg+rknk++ Pavir.3KG000100.1.p 32 HEQALNCPRCDSTNTKFCYYNNYSTTQPRYFCKACRRYWTQGGTLRNVPVGGGCRKNKHN 91 7899******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 30 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.9E-34 | 34 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.087 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVASPAREEA TAARNVKAKQ ASGGERKPRP QHEQALNCPR CDSTNTKFCY YNNYSTTQPR 60 YFCKACRRYW TQGGTLRNVP VGGGCRKNKH NRTGGSGGSS SSAPSASSSS SSDPKKVNIT 120 QQLMAMMPVA AAVTTDFPNV LPTFMSTSGS FELPNYDHQL PFAPLSLSPN PSMTTSFLDM 180 LRVGFLDGTS SNYGVRSNIN NGMVLPFLPP SPFGAMQHGH GVIGDQQLVG SLQDAEEVKP 240 IATEHGNING DGGLFGGGSS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Seed endosperm. {ECO:0000269|PubMed:9207153}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG000100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376388 | 1e-45 | AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18. | |||
GenBank | AM084360 | 1e-45 | AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807789.1 | 1e-136 | dof zinc finger protein PBF-like | ||||
Swissprot | O24463 | 5e-57 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A2T7E477 | 1e-136 | A0A2T7E477_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13869.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 4e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG000100.1.p |
Publications ? help Back to Top | |||
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