PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG636700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 374aa MW: 39859.6 Da PI: 6.9265 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.7 | 3.4e-10 | 168 | 214 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l Pavir.2NG636700.1.p 168 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 214 9****************************************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-15 | 164 | 228 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 166 | 229 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.7E-11 | 168 | 221 | No hit | No description |
SuperFamily | SSF57959 | 8.84E-11 | 168 | 219 | No hit | No description |
Pfam | PF00170 | 3.8E-9 | 168 | 212 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.48E-22 | 169 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAMPPKPGDP PQRSPGRSPN LNLPCPLPPV PGGAPPPPQQ PGGGLPAPRV GHHRRARSEV 60 AFRFPDDLGA GGGAGFDEIG SEDDLFSTFM DMDKIAGADR DRAAETSSPP RPAKHRHSAS 120 FDGFGMGPAG GGTGGQQDGA GGVFGEVMEA KKAMSSEQLA ELAAIDPKRA KRIIANRQSA 180 ARSKERKARY ITELERKVQT LQTEATTLSA QLTLFQRDTT GLSAENAELK IRLQAMEQQA 240 QLRDALNDAL KQEVERLKIA TGEMSKSNEP YSMGMQHVTY SPSFFQLSEQ HGVQHHGNIQ 300 LPPHFQQPPP SVPSHQMLSH PPNSLSDMMQ QDSLGRLQGL DIGKGSVAVK SEAEVVVKSE 360 GSSISAGESN STF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8469 | 0.0 | callus| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG636700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964870 | 0.0 | EU964870.1 Zea mays clone 282242 transcription factor RF2b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958698.1 | 0.0 | transcription factor RF2b | ||||
Refseq | XP_025799971.1 | 0.0 | transcription factor RF2b-like | ||||
Swissprot | Q6S4P4 | 1e-142 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A2S3H5C0 | 0.0 | A0A2S3H5C0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7F053 | 0.0 | A0A2T7F053_9POAL; Uncharacterized protein | ||||
TrEMBL | K3ZUE3 | 0.0 | K3ZUE3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba00224.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 3e-81 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG636700.1.p |
Publications ? help Back to Top | |||
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