PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG632400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 352aa    MW: 38471.2 Da    PI: 7.1319
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG632400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.86e-344498155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+Wtp+LHerFveav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  Pavir.2NG632400.1.p 44 KPRLKWTPDLHERFVEAVHQLGGPDKATPKTIMRIMGIPGLTLYHLKSHLQKYRL 98
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.16841101IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-324299IPR009057Homeodomain-like
SuperFamilySSF466894.3E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-244499IPR006447Myb domain, plants
PfamPF002493.0E-104697IPR001005SANT/Myb domain
PfamPF143791.8E-25146192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMYHQQQLHG HSQHLSSRSG LPPEKQFLLQ GGGDAGLVLS TDAKPRLKWT PDLHERFVEA  60
VHQLGGPDKA TPKTIMRIMG IPGLTLYHLK SHLQKYRLSK NLQSQANIGN AKNVLGCRTG  120
TDKPFEGNGS PASHLNMEPQ IINRSMHISE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QEALAKQSVD LDAGVLGQDA AAETQQLSEL ISRASATKRV QLHHQHLGGV  240
GDGSVDSCLT ACEGSQRDHD MLSIGLSPAP TPTPTPTPRG GYPFIEAARS GGNDRGGAST  300
SCEEFLFLQE PAGTRGSSSD EQQELDLNIN DRNPPRPRHC EKIDLNGSSW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG632400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794611e-165HF679461.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB55 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803979.10.0myb-related protein 1-like isoform X1
SwissprotQ9FK473e-85PHLA_ARATH; Myb-related protein 1
SwissprotQ9SQQ92e-85PHL9_ARATH; Myb-related protein 2
TrEMBLA0A3L6QVI40.0A0A3L6QVI4_PANMI; Myb family transcription factor APL-like
STRINGPavir.Ba00251.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.47e-85myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]