PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG624700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 380aa    MW: 40053.8 Da    PI: 5.9085
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG624700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.7e-051353337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                         ++ C+ +   ++  +C+ ++  lC  C  + H g       H
  Pavir.2NG624700.1.p 13 PPACDFCAGLPAVVYCRGDSARLCLPCDRHVH-GantvssrH 53
                         578***************************99.434555555 PP
2CCT64.33.6e-22336377344
                  CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+ 
  Pavir.2NG624700.1.p 336 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKSG 377
                          5689***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3991158IPR000315B-box-type zinc finger
SMARTSM003362.3E-101158IPR000315B-box-type zinc finger
CDDcd000217.79E-61458No hitNo description
PROSITE profilePS5101714.932334376IPR010402CCT domain
PfamPF062031.4E-16336376IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSVAGAADKV MPPPACDFCA GLPAVVYCRG DSARLCLPCD RHVHGANTVS SRHARAPLCA  60
ACRAAAAAFR RGGAVFLCAN CDFEEERQRD GDPRPLHDRG AVESYAGCPS IAELAAILGV  120
GGCEKAEAAA GHGHGDGWWP AWEEPQVLRL EDVIVPTTSC HGLQPLLTPS SPKNPSSGGK  180
LTEEVIRQLG ELAKSEAAAM AFSEAEPADG EQLPSWASSE YGDFGAFDND ACHEAASMAV  240
PSCEEAWVAT DGDGGACREA REQAPAPASS LAEPCLLSSF VEMSEICPSM TLRSSSVGVD  300
SGSSRKRDAA EAAPQQASPA PAKKGGYDVA YPDRGTVISR YKEKRKNRRF DKQIRYESRK  360
ARADGRLRIK GRFAKSGEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG624700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432260.0AC243226.1 Panicum virgatum clone PV_ABa006-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799929.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A3L6T7G20.0A0A3L6T7G2_PANMI; Zinc finger protein CONSTANS-LIKE 13-like isoform X1
STRINGPavir.Ba00179.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.15e-16B-box type zinc finger protein with CCT domain