PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG603900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 344aa    MW: 36427.5 Da    PI: 7.1883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG603900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  Pavir.2NG603900.1.p 14 RGLWSPEEDEKLMNHIAKYGHGSWSSVPKLAGLERCGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding53.55.4e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y
  Pavir.2NG603900.1.p  67 RGAFSQEEEDLIIHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111
                          89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-25964IPR009057Homeodomain-like
PROSITE profilePS5129418.92961IPR017930Myb domain
SuperFamilySSF466891.46E-3012108IPR009057Homeodomain-like
SMARTSM007178.0E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001671.07E-111761No hitNo description
PROSITE profilePS5129427.13862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2665116IPR009057Homeodomain-like
SMARTSM007176.4E-1666114IPR001005SANT/Myb domain
PfamPF002495.6E-1667111IPR001005SANT/Myb domain
CDDcd001671.93E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MARRTSGPKK KLRRGLWSPE EDEKLMNHIA KYGHGSWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRQRG  120
IDPATHKPLA EAAGSGRGGA AAASRARTAV FSDAELILQS SSAGKHMPPP PVTAESYVYS  180
RSISADGGAS DGSLQSLSGY NQTGDFAEAY LQDPDALQPC GPSGVPAVVL PSASSSSTLN  240
SMGGLSPAAT TATTGTDELS TQQSCSASHL PCLELGTSGY ANGATAAVDH YGAALDELKW  300
SDYVFDGYGG GAQYQQGQCI YGDSKDAVQF VDASGLGSSW CLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.40640.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG603900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0340161e-170BT034016.1 Zea mays full-length cDNA clone ZM_BFc0036C19 mRNA, complete cds.
GenBankBT0353991e-170BT035399.1 Zea mays full-length cDNA clone ZM_BFb0059D04 mRNA, complete cds.
GenBankBT0409891e-170BT040989.1 Zea mays full-length cDNA clone ZM_BFc0162L22 mRNA, complete cds.
GenBankBT0675251e-170BT067525.1 Zea mays full-length cDNA clone ZM_BFc0072I17 mRNA, complete cds.
GenBankKJ7276141e-170KJ727614.1 Zea mays clone pUT5525 MYB transcription factor (MYB23) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802131.10.0transcription factor MYB61-like
TrEMBLA0A2S3H4C10.0A0A2S3H4C1_9POAL; Uncharacterized protein
STRINGPavir.J24653.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.15e-74myb domain protein 50