PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG599500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 693aa    MW: 75973.5 Da    PI: 4.5246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG599500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48.1e-143175348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +W++eEd  l   ++++G+++W+ Ia+ +   +t+ qc+ rw++yl
  Pavir.2NG599500.1.p 31 SWSAEEDNVLRAQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 75
                         6****************************9.**************7 PP
2Myb_DNA-binding43.28.8e-1481124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g W++eEd ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
  Pavir.2NG599500.1.p  81 KGGWSKEEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 124
                          688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.7362479IPR017930Myb domain
SMARTSM007175.8E-132877IPR001005SANT/Myb domain
CDDcd001674.48E-133175No hitNo description
SuperFamilySSF466891.65E-2631122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-193282IPR009057Homeodomain-like
PfamPF139213.5E-153292No hitNo description
PROSITE profilePS5129417.29380130IPR017930Myb domain
SMARTSM007171.5E-1480128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1983129IPR009057Homeodomain-like
CDDcd001671.60E-1084125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MATGPDLSSS SGAAAAAVPD AAAKKSGHIV SWSAEEDNVL RAQIALHGTD NWTIIAAQFK  60
DKTARQCRRR WYNYLNSECK KGGWSKEEDM LLCEAQKLLG NRWTEIAKVV SGRTDNAVKN  120
RFSTLCKRRA KDDEPFQENG TPCSNTNAKR VLTKTGCVTP GTAGSSLPMK QISSDLKENI  180
VPNMRLFGQE KGTQQDARQP LATISSNNQQ NSNTVKSRNL VATTTKTLVG PEQHSVKEGN  240
FMKKDDPKVS ILLQQADLLC SLATKINHED TSQSMDDAWQ QLQHHLVKKE DNGISENSGS  300
GIASLLEELD DLIVDPYESK DEEEEKLREQ NGQRQTDVEN EQCSDPSQAS MEATSNMAPD  360
EMMEVHTVGN YKEVSSLCRI MLSGSMEACP DAKIPASENL SEVAEYRRLQ RVESTSPVLT  420
DFDDFIIDPY ENKEEDEQNL RELNGQIDVH DHQSYCSSQA TMEVTSEIAP DELMEACPVD  480
NCKEDNNLCR NVLSGSMEPS PGAEKAASED LSEAAEERRL QCMESISPIP TNFQTKEYGE  540
TPVSENLNEV AEDSWLQCVE FTSPAHTLLL AKAGAETFAS PGTAVVAKDS KLPSMEFSSP  600
ADTVLRAKAG AETYASPRIA VVAKDSKLPS MEFTSPAHTV ATFQPYADDM PTPKFTASER  660
NFLLSVLELT SPGSRPETSQ QPSCKRALLN SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-293212910107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.86041e-169callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG599500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799285.10.0transcription factor MYB124 isoform X2
TrEMBLA0A2T7EYZ40.0A0A2T7EYZ4_9POAL; Uncharacterized protein
STRINGPavir.J36475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-83MYB family protein