PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG591000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 715aa    MW: 82493.7 Da    PI: 8.3412
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG591000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.24.9e-2732119190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn+YA++ GFs+r+s+s++ k++++i++rtf+Cs+eg r+++k++ e+++ +r+etr+ C+a++k++++ dg ++++++e eHnH la
  Pavir.2NG591000.1.p  32 QFYNAYARDKGFSIRRSSSHNVKNSTTIKNRTFCCSREGVRRPDKRE-ESSSYSRPETRCMCQARMKISLT-DGLYCIYEFEPEHNHILA 119
                          6*******************************************999.999********************.***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2132119IPR004330FAR1 DNA binding domain
PfamPF105512.6E-29241335IPR018289MULE transposase domain
PfamPF0443414330347IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.557510557IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-5510553IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-5532559IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MLQTEATQVE NCTEDRIPKV GMKFCTEEEA YQFYNAYARD KGFSIRRSSS HNVKNSTTIK  60
NRTFCCSREG VRRPDKREES SSYSRPETRC MCQARMKISL TDGLYCIYEF EPEHNHILAS  120
SSQVHHLRSQ RKITEAQLAS VENAKAVGIS NKATFDLMAK EAGGVENLGF TREDMKNKLY  180
SKRSLQTNYG DTGGVLEYLE KKTSEDGKFF YSIQVDEDDL ITNIFWTDSK MVADYELFGD  240
VVCFDTTYRK LNDGRPFGLL VGVNNHKKTT IFGAALLYDE TAESFVWLFN TFLTAMSGKK  300
PKTILTDEDA AMAKAIKIVL PETHHRICVW HMNQNACKHL AGVVEDYKKF NKDFQNCIYD  360
QEEEEEFINT WNNLLDKYKL QNNEWLQRLF DKREKWALAY GRNTFSADMV STQRSESMNN  420
ELKGYISVKY DILTFFEHFE RLVADKRNEE VKCDFKATQS TPKLKSELRI LRHAARIYTP  480
TIFKVFQEQV MQTLNCDLFY CGESNAEKEY KVKVYGRRNE HVVKFSALEV EVKCSCKKYE  540
FVGILCCHAL KILDINNIKK IPEHYILNRW TIDAKVVHIK SNSETHEDPK TKLSKRRQEL  600
CRILKIRPDS DVGTSSHPEG TEEEEQTIKP KGLKVKEKEI HGSARPIGGF EKATQQKKKT  660
KKDPMVSGSA KEANTQRKKK GKNDPKDCGP IVEVDNVTYG QPHYTDLVRD FSYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG591000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683537.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1W0W5Z80.0A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.J09168.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-126FAR1-related sequence 5