PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG586900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 704aa MW: 80023.1 Da PI: 7.7595 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.3 | 5e-14 | 44 | 80 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk ++ Pavir.2NG586900.1.p 44 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 80 5667777777************************876 PP | |||||||
2 | FAR1 | 82.8 | 5.6e-26 | 114 | 201 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA ++GFsvrks+s+ks++n ++ rtfvCs+eg+++++k+ +++++r tr+gC a+l +k + + k++vt+++ eHnH+la Pavir.2NG586900.1.p 114 EFYNKYAGHIGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLA 200 6*********************6666.899*************9988..99*************************************98 PP FAR1 91 p 91 p Pavir.2NG586900.1.p 201 P 201 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-6 | 38 | 93 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.57E-10 | 40 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-11 | 43 | 82 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.24E-7 | 43 | 81 | No hit | No description |
Pfam | PF00320 | 1.2E-11 | 44 | 79 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF03101 | 3.2E-23 | 114 | 201 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.2E-26 | 324 | 418 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.916 | 592 | 639 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-6 | 609 | 638 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.6E-6 | 614 | 641 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MMHMLVAPDG GGVELQPYGA PPVEQELELL RDNADDGCEG HVRCLRCGIS GNATPHMRRG 60 PDGPRTLCNA CGIAYRKGKM RRMIEAEPPI DEAALAKLVP EVGMEFESEE KAYEFYNKYA 120 GHIGFSVRKS TSHKSSENIT KVRTFVCSRE GYNRDKKSLE AKKPRLDTRI GCPARLIIKV 180 TPECKYRVTD FKAEHNHQLA PPSTMHMLRS QRILTELQSG EAELSDDSVV TPTTKATGDL 240 VVRQVSFLRS ISLLPADYKN SLRSKRMKTR QPGDGGAILK YLQTMQMDNP SFFYTMQIDE 300 DDKLTNFFWA DPKSRDDFNY FGDVLCLDTT YRINGYGRPL ALFLGVNHHK QTIIFGAAML 360 YDESFESYKW LFESFKIAMH GKQPAVALVD QSIPLSSAMA AAWPNTTQRI CAWHVYQNSL 420 KHLNHVFQGS KTFAKDFSKC VFGYEDGDEF LYAWRSMLEK YDLRHNEWLS KVFDEKEQWA 480 LAYGRHIFCG DIISALQAES FSSILKKFLS PQLDLVSFFK HYERAVDEHR YAELQADFQA 540 SQSYPRIPPA KMLKQTAHTY TPVVFEIFRK EFELFMDSVL FSCGEAGTTS EYKVASSEKP 600 KEHFVRFDSS DCSCVCTCRK FEFMGIPCCH MLKVLDYRNI KELPQKYLLK RWRRTAKSAN 660 EDNEGNATNT NGSSLNAPAP AANHHGFQNF SAMIQDTSVS SMP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17965 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG586900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055818 | 0.0 | BT055818.1 Zea mays full-length cDNA clone ZM_BFb0212N15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801139.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025801140.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A3L6T7X8 | 0.0 | A0A3L6T7X8_PANMI; Protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | Pavir.Ba00417.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-120 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG586900.1.p |