PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG560300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 484aa    MW: 53763.7 Da    PI: 7.3952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG560300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06196218426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C+f + tG Ck G++C F+Hg
  Pavir.2NG560300.2.p 196 KPCHFLFSTGSCKKGENCLFSHG 218
                          58********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.4E-6190219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15192220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5193221IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5196218IPR000571Zinc finger, CCCH-type
SuperFamilySSF549284.21E-9327417IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.763335413IPR000504RNA recognition motif domain
SMARTSM003600.0017336409IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.8E-7346415IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVSRGAVRPQ GSRLREQEMN IDECVRSLRN RIRRLHPFNA DGIVSYMISS KTPVEIRQYL  60
LASDDQIQRL IVEAKYLFPM LPPPQPPCEG AYIPYIHWQP QFHPSGSYHG IQDPVHPINQ  120
VGPLQQHQYH PSGSSHGIQA QNPSGPTGAC QSPFPGFIGL GEHFQSFCIP GDGLPSNYGN  180
ACQVTGYPSS SKEQIKPCHF LFSTGSCKKG ENCLFSHGSD SPKTNSMRQV QTPESLPMLE  240
KEISELLLSL RPPKVPVESL ANIYIKRYGK PLKFGDSCTK GQQNDHSFTC LLTKLCTTRV  300
IERQGQCYIV PLEEAPKYLD DGFKLVMSPA GNGSDQIYIT FGPKSTFTKE DAWNYFSQYG  360
PVNDVRIPLR KKRMFGYVIF LYPGTAKRVL SERSPRNPHF ICGDQVFVKA WKEKHELEKL  420
AEKDAHSNSG ANNASGLSSV IHEHQTGDDS TAESSPVQSH LDEAPAARDS DDLGLPGTLD  480
DIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG560300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803961.10.0putative zinc finger CCCH domain-containing protein 51
TrEMBLA0A2T7EXX40.0A0A2T7EXX4_9POAL; Uncharacterized protein
STRINGPavir.Ba00523.1.p0.0(Panicum virgatum)