PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG560300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 485aa MW: 53892.8 Da PI: 7.2469 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1e-06 | 196 | 218 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+f + tG Ck G++C F+Hg Pavir.2NG560300.1.p 196 KPCHFLFSTGSCKKGENCLFSHG 218 58********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-6 | 190 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.15 | 192 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 193 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-5 | 196 | 218 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54928 | 4.34E-9 | 327 | 417 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 9.763 | 335 | 413 | IPR000504 | RNA recognition motif domain |
SMART | SM00360 | 0.0017 | 336 | 409 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 1.8E-7 | 346 | 415 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MVSRGAVRPQ GSRLREQEMN IDECVRSLRN RIRRLHPFNA DGIVSYMISS KTPVEIRQYL 60 LASDDQIQRL IVEAKYLFPM LPPPQPPCEG AYIPYIHWQP QFHPSGSYHG IQDPVHPINQ 120 VGPLQQHQYH PSGSSHGIQA QNPSGPTGAC QSPFPGFIGL GEHFQSFCIP GDGLPSNYGN 180 ACQVTGYPSS SKEQIKPCHF LFSTGSCKKG ENCLFSHGSD SPKTNSMRQV QTPESLPMLE 240 KEISELLLSL RPPKVPVESL ANIYIKRYGK PLKFGDSCTK GQQNDHSFTC LLTKLCTTRV 300 IERQGQCYIV PLEEAPKYLD DGFKLVMSPA GNGSDQIYIT FGPKSTFTKE DAWNYFSQYG 360 PVNDVRIPLR KKRMFGYVIF LYPGTAKRVL SERSPRNPHF ICGDQVFVKA WKEKHELEKL 420 AEKDAHSNSG ANNASGLSSV IHEHQTGEDD STAESSPVQS HLDEAPAARD SDDLGLPGTL 480 DDIY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG560300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803961.1 | 0.0 | putative zinc finger CCCH domain-containing protein 51 | ||||
TrEMBL | A0A2T7EXX4 | 0.0 | A0A2T7EXX4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00523.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15176 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG560300.1.p |