PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG548700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 165aa MW: 17513 Da PI: 7.3126 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 132.1 | 7e-41 | 15 | 161 | 7 | 168 |
YABBY 7 seqvCyvqCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +e++ vqCnfC til+v vP l +k+v+v+CG C +lsv+l a + +++ +++ ++ ++ +++++ + Pavir.2NG548700.1.p 15 PERLGCVQCNFCATILLVGVPCGGLqLKTVAVQCGSCGGILSVTLPPAPPAAYSVEL------PPQEPGADPPPRDSDESSGEDRETAA- 97 799999****************987479***************99988766666553......33333333333332222222222222. PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 e++ p v++PPe++qr Psayn+fikeei+rika++P+i+h+eafsaa+knWah+P+i Pavir.2NG548700.1.p 98 ------AVAENHAF---PAVMKPPERKQRTPSAYNCFIKEEIRRIKATDPNITHKEAFSAASKNWAHLPRIQQ 161 ......22334444...4699*************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.4E-43 | 15 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-8 | 105 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.5E-5 | 109 | 160 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MASAARHPCF GGLLPERLGC VQCNFCATIL LVGVPCGGLQ LKTVAVQCGS CGGILSVTLP 60 PAPPAAYSVE LPPQEPGADP PPRDSDESSG EDRETAAAVA ENHAFPAVMK PPERKQRTPS 120 AYNCFIKEEI RRIKATDPNI THKEAFSAAS KNWAHLPRIQ QKEN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG548700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801746.1 | 1e-107 | protein YABBY 7-like | ||||
Swissprot | A2PZN8 | 1e-61 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A2S3H3E8 | 1e-107 | A0A2S3H3E8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EXL6 | 1e-107 | A0A2T7EXL6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00601.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-34 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG548700.1.p |