PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG542700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 405aa MW: 42774.9 Da PI: 8.8901

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG542700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.6e-53	30	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk Pavir.2NG542700.1.p 30 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 118 79**************************.88***********8888899******************************* PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Pavir.2NG542700.1.p 119 PILAStgSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 158 99877888**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-63	27	196	IPR003441	NAC domain
PROSITE profile	PS51005	61.565	30	196	IPR003441	NAC domain
Pfam	PF02365	4.1E-28	31	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MRSMESTDSS SGSAPPRRRQ QQQPGSAPDL PPGFRFHPTD EELVVHYLKK KAASAPLPVA 60 IIAEVDLYKF DPWELPDKAT FGEHEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPI 120 LASTGSREKV GVKKALVFYR GKPPKGLKTN WIMHEYRLAD AAGSTTAHRP PPGAAGGGKA 180 TSLRLDDWVL CRIYKKANKL GVGDHQRSLE CEDSVEDAVV AAYHTHSAAP VVAAAGGGGA 240 HGGNYTSLLH HHNGHEDHFL DGLLTAEDAA GLSAGASSLS HLAAAARAAP SATKQLLVPS 300 STPFNWLDAP ALAILPPTKR FHDGGMSLSS PSDRNHLAAV GAGAVDNGAS AIPTFLNPLG 360 VQAAATYHHH AILGTPVPPE AAAAAAYSFQ HPYQLSGSGV NWNP*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MRSMESTDSS SGSAPPRRRQ QQQPGSAPDL PPGFRFHPTD EELVVHYLKK KAASAPLPVA  60
IIAEVDLYKF DPWELPDKAT FGEHEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPI  120
LASTGSREKV GVKKALVFYR GKPPKGLKTN WIMHEYRLAD AAGSTTAHRP PPGAAGGGKA  180
TSLRLDDWVL CRIYKKANKL GVGDHQRSLE CEDSVEDAVV AAYHTHSAAP VVAAAGGGGA  240
HGGNYTSLLH HHNGHEDHFL DGLLTAEDAA GLSAGASSLS HLAAAARAAP SATKQLLVPS  300
STPFNWLDAP ALAILPPTKR FHDGGMSLSS PSDRNHLAAV GAGAVDNGAS AIPTFLNPLG  360
VQAAATYHHH AILGTPVPPE AAAAAAYSFQ HPYQLSGSGV NWNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-73	20	198	7	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-73	20	198	7	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-73	20	198	7	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-73	20	198	7	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-73	20	198	10	170	NAC domain-containing protein 19
3swm_B	2e-73	20	198	10	170	NAC domain-containing protein 19
3swm_C	2e-73	20	198	10	170	NAC domain-containing protein 19
3swm_D	2e-73	20	198	10	170	NAC domain-containing protein 19
3swp_A	2e-73	20	198	10	170	NAC domain-containing protein 19
3swp_B	2e-73	20	198	10	170	NAC domain-containing protein 19
3swp_C	2e-73	20	198	10	170	NAC domain-containing protein 19
3swp_D	2e-73	20	198	10	170	NAC domain-containing protein 19
4dul_A	2e-73	20	198	7	167	NAC domain-containing protein 19
4dul_B	2e-73	20	198	7	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG542700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802635.1	0.0	NAC transcription factor NAM-B2-like
Swissprot	A0SPJ9	0.0	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2S3H3E5	0.0	A0A2S3H3E5_9POAL; Uncharacterized protein
STRING	Pavir.Ba00642.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	6e-89	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Pavir.2NG542700.1.p

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]