PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG531000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 372aa MW: 40257.4 Da PI: 7.5268 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k++G g+W+t ++ g+ R++k+c++rw +yl Pavir.2NG531000.1.p 14 KGPWTPEEDEKLVAYIKKHGQGNWRTLPKNAGLARCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.8e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Pavir.2NG531000.1.p 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.537 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.46 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.45E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK KHGQGNWRTL PKNAGLARCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHAPRL DLLDLSALLK PAAYYPTQAD LDTLRAFEPL ANYPDLLRLA ATTLLSGSAA 180 IADQQQQQQQ LLPWLLQAQM AQAAAMAPPP PPQQQQGGQN QFMQQQAAVA ACQIPDLVHA 240 SPTTVAQQLA AAAQQQQHQP QEMAAAACHS MQPPTGYAAD CQLDVPALMQ MVQQPDASNL 300 QQWSSTVTSS SNNNHNVGSG VSTPSSSPVA GLNHSTSAGT TTYGGASASS SDAAALFNLQ 360 LSDLLDVSDY M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG531000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248579 | 0.0 | AK248579.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802158.1 | 0.0 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 2e-96 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A2S3H3C9 | 0.0 | A0A2S3H3C9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00668.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-84 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG531000.1.p |
Publications ? help Back to Top | |||
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