PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG487900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 913aa    MW: 102431 Da    PI: 8.3673
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG487900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.42e-51331474117
                 CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          e  +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++ee+p
  Pavir.2NG487900.1.p  33 EaGTRWFRPNEIYAVLANHARFKVHAQPIDKPASGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEEDP 122
                          4379************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                          +f rrcywlL++ele+ivlvhy+++
  Pavir.2NG487900.1.p 123 NFFRRCYWLLDKELERIVLVHYRQT 147
                          **********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.32127153IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-6130148IPR005559CG-1 DNA-binding domain
PfamPF038593.1E-4434146IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.04E-10379465IPR014756Immunoglobulin E-set
SuperFamilySSF484031.35E-16554667IPR020683Ankyrin repeat-containing domain
PfamPF127963.9E-7555633IPR020683Ankyrin repeat-containing domain
CDDcd002044.94E-14556664No hitNo description
Gene3DG3DSA:1.25.40.209.7E-17563669IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.335572667IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808605637IPR002110Ankyrin repeat
SMARTSM002486.3E-6605634IPR002110Ankyrin repeat
SMARTSM002481900644673IPR002110Ankyrin repeat
SuperFamilySSF525409.03E-11719821IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24770792IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334771800IPR000048IQ motif, EF-hand binding site
PfamPF006120.0057773791IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011793815IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.53794818IPR000048IQ motif, EF-hand binding site
PfamPF006127.3E-4795815IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249876904IPR000048IQ motif, EF-hand binding site
PfamPF006120.12877896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MAGGAGARDP LVASEIHGFL TFADLNFDKL LAEAGTRWFR PNEIYAVLAN HARFKVHAQP  60
IDKPASGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGEE  120
DPNFFRRCYW LLDKELERIV LVHYRQTSEE NAIPPPHIEA EVAEVPPINI IHYTSPLTST  180
DSASARTELS SCAAAAPEEI NSHGGRAISC ETDDHDSSLE SFWVDLLESS MKNDTSVRGG  240
SLTPNQQTNY GMRDSGNNIL NTNATSNAIF SSPDNVVSEA YAANPSLNQV SESYYGALKH  300
QVNQSPSLLT SDLDSQSKPL ANSIMKTPVD GNMPSDVPTR QNSLGLWKYL DDDISCLMNN  360
PSSAVPITRS VIDEMPFHII EISSEWAYCT DDTKVLMVGY FLDNYKHLAG ANLYCVIGEQ  420
CVTADTIQTG VYRFMARPHV PGRVNLYLTL DGKTPISEVL SFEYRTMPGS SDNDEPKKSK  480
LHMQMRLARL LFSTSQKKIA PKFLVEGSRV SNLLSASTEK EWIELFKCIT DSKGTNIPAT  540
ESLLELVLRN KLQEWLVEKI IEGHKSTDRD DLGQGPIHLC SILGYTWAIL LFSLSGLSLD  600
FRDSSGWTAL HWAAYYGREK MVAALLSAGA NPSLVTDPTH DDPGGLTAAD LAARQGFDGL  660
AAYLAEKALT AHFEAMSLSK DKRSTSRTQS IKQISKEFEN LTEQELCLRE SLAAYRNAAD  720
AASNIQAALR ERTLKLQTKA IQSANPEIEA ATIVAAMRIQ HAFRNYNRKK MMRAAARIQS  780
HFRTWQMRRN FMDMRRQAIK IQAAYRGHQV RRQYRKVIWS VGVVEKAILR WRKKRKGLRG  840
IATGMPVAMS TDTEAASTVE EDYYQVGRQQ AEDRFNRSVV RVQALFRSHR AQQEYRRMKV  900
AHEEAKVEFS QQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92970.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG487900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800750.10.0calmodulin-binding transcription activator CBT isoform X1
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A3L6QU260.0A0A3L6QU26_PANMI; Calmodulin-binding transcription activator 6-like
STRINGPavir.Ba00948.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators