PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG467400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 370aa    MW: 40465.6 Da    PI: 4.5584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG467400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19116165255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp     +  r++lg+f ++eeAa+a++a +++++g
  Pavir.2NG467400.1.p 116 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 165
                          69*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.67116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-32116174IPR001471AP2/ERF domain
SMARTSM003805.2E-35116179IPR001471AP2/ERF domain
CDDcd000183.59E-31116175No hitNo description
SuperFamilySSF541719.81E-22116174IPR016177DNA-binding domain
PRINTSPR003671.2E-10117128IPR001471AP2/ERF domain
PfamPF008471.2E-11117165IPR001471AP2/ERF domain
PRINTSPR003671.2E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MCGGAILANL TKQPGPRRLT ERDLWQEKKK PKRGAGGGRR WFLAEEDEDF EADFEDFQGD  60
SDESDLELGE GEDDDVVEIK PFAAKRTSSK DGLSTMTTAG YDGPAARSAK RKRKNQYRGI  120
RQRPWGKWAA EIRDPQKGVR VWLGTFNSPE EAARAYDAEA RRIRGKKAKV NFPDAPTVAQ  180
KRRSGPAAAK APKSSVEQKP TVKPAVNNLA NANASYPPAD YTSSKPSVQH ANMAFHLAMN  240
SASPIEDPVM NLHSDQGSNS FDCSDLSWEN DTKTSDITSI APISTIAEGD ESAFVNSNLN  300
NSLVPSVMEN NAVDLTDGLT DLEPYMRFLL DDGASESIDN LLNLDGSEDV MSNMDLWSFD  360
DMPAAGDFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19116173563ATERF1
3gcc_A1e-19116173563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.9730.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG467400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816350.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-166ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A3L6RNH80.0A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like
STRINGPavir.J04875.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-35related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]