PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG446500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 215aa    MW: 23203.7 Da    PI: 5.7392
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG446500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-08333434
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                         ++C+ +e+ ++ lfC  ++  lC+ C ++ H
  Pavir.2NG446500.1.p  3 TICDVCESAPAVLFCAADEAALCRACDEKVH 33
                         68**************************998 PP
2zf-B_box21.35.4e-075291237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         +  +C+ +e+ ++ ++C  ++  lC +C ++ H g    H
  Pavir.2NG446500.1.p 52 KLARCDICESFPAFFHCDIDGASLCLSCDMTVHVGgkrsH 91
                         6789*****************************6555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.267147IPR000315B-box-type zinc finger
SMARTSM003361.1E-8147IPR000315B-box-type zinc finger
PfamPF006431.1E-6341IPR000315B-box-type zinc finger
CDDcd000211.29E-8345No hitNo description
SMARTSM003361.6E-65196IPR000315B-box-type zinc finger
CDDcd000213.19E-55584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANS NKLARCDICE  60
SFPAFFHCDI DGASLCLSCD MTVHVGGKRS HGRYLLLRQS VEFPGDKLGH MDDDVAMQSK  120
DPENQIDQTK PSHSATKEQR ANHNNSSDDP ASDGNCDDQG NINSKMIDLN MRPARTDGQG  180
SNSQIQTHGV VLSVNNHDSP GVVPTSNYEG DANK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.37030.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG446500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957436.11e-137B-box zinc finger protein 19 isoform X2
SwissprotC0SVM58e-65BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2S3H1V21e-144A0A2S3H1V2_9POAL; Uncharacterized protein
STRINGPavir.Ba01246.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-67DBB family protein