PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG443300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 140aa MW: 15366.7 Da PI: 9.4149 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.6 | 8.7e-08 | 27 | 53 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ kF+H++ Pavir.2NG443300.1.p 27 PDRPECQYYMKTGGCKFGAVRKFHHPR 53 579****************99999985 PP | |||||||
2 | zf-CCCH | 44.7 | 2.1e-14 | 73 | 99 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G++CkF H++ Pavir.2NG443300.1.p 73 PGEELCKFYSRYGICKFGANCKFDHPM 99 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.836 | 26 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.48 | 27 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-4 | 28 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-8 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.591 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-7 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-11 | 73 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-6 | 76 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MLSPYRSSSF PVPQYALQRE DVFPERPDRP ECQYYMKTGG CKFGAVRKFH HPRVRSLPPP 60 DCVLSPMGLP IRPGEELCKF YSRYGICKFG ANCKFDHPMA TPMGVYAYGF SASASASAST 120 NVPMARRLLG SPPGSGYTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG443300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036907 | 1e-129 | BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817371.1 | 9e-83 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q5JLB5 | 5e-76 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A0A9D1L3 | 2e-83 | A0A0A9D1L3_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A2S3HNP2 | 5e-83 | A0A2S3HNP2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DCH6 | 5e-83 | A0A2T7DCH6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01299.1.p | 7e-97 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 9e-46 | zinc finger nuclease 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG443300.1.p |
Publications ? help Back to Top | |||
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