PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG442400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 490aa    MW: 51913.1 Da    PI: 9.9711
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG442400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.5e-12337395563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr +r   NR++A +s +RK +++ eLe++v +L+ e ++L +++   + e+++lk ++
  Pavir.2NG442400.1.p 337 KRVKRILANRISAAKSKERKVKYMGELERRVHVLQMETSTLSSKAALSQRECEALKVQN 395
                          899*****************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-15333397IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.025335398IPR004827Basic-leucine zipper domain
PfamPF001701.5E-10337395IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.34E-10337392No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-10337394No hitNo description
CDDcd147032.43E-19338389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDEDRSADPA RRARLRSPPG GQQPQAPRAP ALPMDLSSQY QRRFAPPLFL PPMAPRLVPG  60
SGFSAFSNYQ GPPALAPPPA GGSHLARSLP KAPFFSTESL APLPYSADPA AGVSAEAGAA  120
VPRSAPSLGS EQQGPSASGL PPRGAGHRRS RSDFIIGFSL QNQLPLPVLP AAEGFSKSAD  180
AAALQELFRS YRDPKSLSGL GSSGDGPGEG NSHLGNQMSS QRAWSPADSS DNEAESWATG  240
GGGGPSISHP RHCRSLSVDS IMGNLNFGAL GQVSPTLLPP STASGAGAGV PRTGSGPSGS  300
AAAVATSELA NGEFTESEMR KIMANERLAE LALADPKRVK RILANRISAA KSKERKVKYM  360
GELERRVHVL QMETSTLSSK AALSQRECEA LKVQNNEMRI MLQALEQQAQ LKDALNQALS  420
AEVQRLKQAA GEATDAHAPN GSYHHMHRQI LEQKLLQLQK QPSEAQKAQQ QQQPQESEQF  480
KAQQKQWNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG442400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803483.10.0transcription factor RF2a-like
TrEMBLA0A3L6T4B90.0A0A3L6T4B9_PANMI; Uncharacterized protein
STRINGPavir.J03608.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148701820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-52bZIP family protein