PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG441900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 330aa MW: 33625.5 Da PI: 4.6649

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG441900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.8	1.2e-31	73	161	7	95
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 r ++hTkv+gR+RR+R+ a+caar+ L++eL +++d++ti WLlqq++pai+++tgt++ +a +++ ++ + ++ +++aa++ + Pavir.2NG441900.1.p 73 RYRDRHTKVEGRGRRIRMAAPCAARVARLTRELQHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAVTGSDGVLRLPAEPAPAAAADVE 161 678********************************************************888886665555555544333332222211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.285	74	128	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.9E-24	75	137	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEPRAPGRGE EDAEPLYLAA EAGGNGTAAA FPVAVDAMGS VEAGGSGVPK PEPVPVEFLG 60 GGLQLANPRP APRYRDRHTK VEGRGRRIRM AAPCAARVAR LTRELQHKSD GETIRWLLQQ 120 SEPAIIAATG TGTVPAIAVT GSDGVLRLPA EPAPAAAADV EQQEPAPKRR RKLQPTRAAA 180 GPSAPAPAAY YPVVADPLLQ ANGGGAISMS SGLAPASAPA APAGAIPFLA LPAAGPGATG 240 DGKQMIPPAA VWMVPQQAGA AGAANQPTHY WAFPTNPELF NVANFQQQAV YGAEQLAGNG 300 ESRDQQPGGQ QSEGEDEEEI AVTDSSSEE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	172	PKRRRKL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269\|PubMed:9338963}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG441900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803340.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	1e-83	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-83	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A3L6QPY7	0.0	A0A3L6QPY7_PANMI; Transcription factor PCF2-like
STRING	Pavir.Ba01284.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG441900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]