PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2NG440900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 29965.6 Da PI: 5.6079 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.7e-12 | 117 | 162 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N +f Lr +P+ +++Ka+ L A YI +L Pavir.2NG440900.3.p 117 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 162 89************************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.021 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-15 | 115 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.22E-12 | 116 | 167 | No hit | No description |
Pfam | PF00010 | 1.4E-9 | 116 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 117 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-10 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MDDLLSPCSS FSPPSPPSFF SHAGHPIIEF TSCEVPEQWL LGDVVVAKNE AGYDDGDDLW 60 SSLSPDSDLS VQPPPPSQPA PPPQQEQEPS ATVPAAQPPG KRRGRKPGPR PEGPTVSHVE 120 AERQRREKLN RRFCDLRAAV PTVSRMDKAS LLADAAAYIA ELRARVARLE AESRRAAAAR 180 WEPVAASCGP PRAPGHGGEA VEVRMLGPDA ASVRATSAAP HAAARLMGAL RSLELHVQHA 240 CVTRVHGLTV QDVVVDVPAQ LQDDDGLRAA LVQVLQEQDS G* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-18 | 116 | 172 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2NG440900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804315.1 | 1e-138 | transcription factor MYC2-like | ||||
TrEMBL | A0A2T7EUS4 | 1e-140 | A0A2T7EUS4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QNX7 | 1e-140 | A0A3L6QNX7_PANMI; Transcription factor MYC2-like | ||||
STRING | Pavir.Ba01305.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-16 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2NG440900.3.p |