PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG440500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 277aa    MW: 29082.7 Da    PI: 6.1707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG440500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12112158354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e Er+RR+++N +f  Lr  +P+       +++Ka+ L  A +YI +L
  Pavir.2NG440500.1.p 112 ASHVESERQRRENLNRRFCDLRAAVPTV-----SRMDKASLLADAARYIAEL 158
                          5899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.142109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15112171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-11113163No hitNo description
Gene3DG3DSA:4.10.280.107.1E-15113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDEHLSPSSV SRPAPFSFSE ASCTILELPS FEVPEQWLLA DVVAAEGENE KDDLGACLGE  60
TPPAAGGVLS PPDSELSKLL LPSPSPSAQA SAPAKRRGRK PGPRPGAGAA AASHVESERQ  120
RRENLNRRFC DLRAAVPTVS RMDKASLLAD AARYIAELRA RVAQLEADAR HHAAVARWEP  180
ASADGDAGAA VGGELHVRKV GRDAAVVRVT SGARHAPAWL MGALRSLELQ VQHACVSRVR  240
GVTTQDVLVD VPAGATALQD DDDLRAALLQ RLQDSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-15113168863Transcription factor MYC2
5gnj_B4e-15113168863Transcription factor MYC2
5gnj_E4e-15113168863Transcription factor MYC2
5gnj_F4e-15113168863Transcription factor MYC2
5gnj_G4e-15113168863Transcription factor MYC2
5gnj_I4e-15113168863Transcription factor MYC2
5gnj_M4e-15113168863Transcription factor MYC2
5gnj_N4e-15113168863Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG440500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801647.11e-135transcription factor MYC2-like
TrEMBLA0A3L6T7221e-157A0A3L6T722_PANMI; Uncharacterized protein
STRINGPavir.J27331.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.14e-24bHLH family protein